{
    "bcoid": "GLY_000487",
    "title": "HCV1a Protein Diseases",
    "description": "The HCV1a Protein Diseases dataset contains diseases caused by Hepatitis C virus (isolate H77) [taxid:63746] ...",
    "filename_list": "hcv1a_protein_disease_glygen.csv",
    "filename": "hcv1a_protein_disease_glygen.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Hepatitis C virus (isolate H77)"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "disease"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P27958-1...",
                "protein_xref..."
            ],
            [
                "P27958-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "do_id"
                },
                {
                    "type": "string",
                    "label": "mondo_id"
                },
                {
                    "type": "string",
                    "label": "mim_id"
                }
            ],
            [
                "P27958-1",
                "protein_xref_glygen_ds",
                "GLY_000487",
                "1883",
                "",
                ""
            ],
            [
                "P27958-1",
                "protein_xref_glygen_ds",
                "GLY_000487",
                "5082",
                "",
                ""
            ]
        ]
    },
    "readme": "Name\n   - HCV1a Protein Diseases\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - 2020-04-29T16:14:08.766000\n\nModified on\n   - 2024-05-17T11:24:02.372Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The HCV1a Protein Diseases dataset contains diseases caused by Hepatitis C virus (isolate H77) [taxid:63746] and is mapped to all UniProtKB canonical accessions. The dataset contains Hepatitis C, Liver Cirrhosis and Hepatocellular carcinoma disease Ontology ID and GlyGen dataset ID. The input file for this dataset is compiled by GlyGen. If you use this dataset please give proper attribution to GlyGen.\n\nDescription Domain\n   Keywords\n   - Hepatitis C\n   - Liver Cirrhosis\n   - Hepatocellular Carcinoma\n   - disease\n   - HCV\n\n   Pipeline Steps\n   - Step-1: The script extracts the UniProtKB canonical accessions, database name, database ID and DOID from the input file as a dataset in a csv format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: hcv1a_protein_disease_glygen.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/compiled/hcv1a_protein_disease_glygen.csv\n   Output Subdomain\n      Name: hcv1a_protein_disease_glygen.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/hcv1a_protein_disease_glygen.csv\n      Name: hcv1a_protein_disease_glygen.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/hcv1a_protein_disease_glygen.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"1\"\n      Name: \"do_id\"\n     Description: \"Disease Ontology identifier\"\n      Unique Values: \"3\"\n      Name: \"mondo_id\"\n     Description: \"The Mondo Disease Ontology (MONDO) identifier\"\n      Unique Values: \"1\"\n      Name: \"mim_id\"\n     Description: \"Disease ID from the OMIM database\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/hcv1a_protein_disease_glygen.csv"
}