{
    "bcoid": "GLY_000326",
    "title": "Fully determined glycans",
    "description": "The dataset provides a set of glycans which are fully determined. Each glycan is associated with a GlyTouCan ...",
    "filename_list": "glycan_fully_determined.csv",
    "filename": "glycan_fully_determined.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Glycan"
        ],
        "tag": [
            "NCBI TaxID"
        ],
        "status": [
            "Reviewed"
        ],
        "file_type": [
            "csv"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Saccharomyces cerevisiae",
            "Homo sapiens",
            "Mus musculus",
            "Rattus",
            "Rattus norvegicus",
            "Drosophila melanogaster",
            "Sus scrofa domesticus",
            "Severe acute respiratory syndrome coronavirus 2",
            "Sus scrofa",
            "Dictyostelium discoideum"
        ]
    },
    "minitable": {
        "content": [
            [
                "G00024MO"
            ],
            [
                "G00025AJ"
            ]
        ],
        "headers": [
            "glytoucan_ac..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                }
            ],
            [
                "G00024MO"
            ],
            [
                "G00025AJ"
            ]
        ]
    },
    "readme": "Name\n   - Fully determined glycans\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - 2019-12-02T15:34:41.971945\n\nModified on\n   - 2024-05-17T11:23:56.334Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The dataset provides a set of glycans which are fully determined. Each glycan is associated with a GlyTouCan Accession. The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281).\n\nDescription Domain\n   Keywords\n   - Glycan\n   - GlyTouCan Accession\n   - Fully determined\n\n   Pipeline Steps\n   - Step-1: The input file was downloaded from the author and a python script was used to extract the data for the GlyTouCan accessions based on the accession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/glycan_masterlist.csv\n      Name: subsumption.tsv\n      URI: https:/data.glygen.org/ln2downloads/glytoucan/2025_03_05/export/subsumption.tsv\n   Output Subdomain\n      Name: glycan_fully_determined.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/glycan_fully_determined.csv\n      Name: glycan_fully_determined.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/glycan_fully_determined.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"9405\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/glycan_fully_determined.csv"
}