{
    "bcoid": "GLY_000290",
    "title": "Glycan Sequences IUPAC Extended",
    "description": "The dataset provides the glycan sequences in IUPAC extended format for the associated glycans (GlyTouCan ...",
    "filename_list": "glycan_sequences_iupac_extended.csv",
    "filename": "glycan_sequences_iupac_extended.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Glycan"
        ],
        "tag": [
            "IUPAC Extended format"
        ],
        "status": [
            "Reviewed"
        ],
        "file_type": [
            "csv"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Sus scrofa",
            "Rattus",
            "Homo sapiens",
            "Mus musculus",
            "Saccharomyces cerevisiae",
            "Drosophila melanogaster",
            "Rattus norvegicus",
            "Severe acute respiratory syndrome coronavirus 2",
            "Sus scrofa domesticus",
            "Dictyostelium discoideum",
            "Hepacivirus C",
            "Severe acute respiratory syndrome-related coronavirus"
        ]
    },
    "minitable": {
        "content": [
            [
                "G00002CF...",
                "?-D-Neup5Gc-..."
            ],
            [
                "G00009BX...",
                "\u03b1-L-Fucp-(1\u2192..."
            ]
        ],
        "headers": [
            "glytoucan_ac...",
            "sequence_iup..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "sequence_iupac_extended"
                }
            ],
            [
                "G00002CF",
                "?-D-Neup5Gc-(2\u2192?)-?-D-Neup5Gc-(2\u2192?)-?-D-Galp-(1\u2192?)-?-D-Glcp-(1\u2192"
            ],
            [
                "G00009BX",
                "\u03b1-L-Fucp-(1\u21922)-\u03b2-D-Galp-(1\u21924)-\u03b2-D-GlcpNAc-(1\u21923)-\u03b2-D-Galp-(1\u21924)-?-D-GlcNAc"
            ]
        ]
    },
    "readme": "Name\n   - Glycan Sequences IUPAC Extended\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - 2019-11-13T16:31:31.525156\n\nModified on\n   - 2024-05-17T11:23:55.178Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The dataset provides the glycan sequences in IUPAC extended format for the associated glycans (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLY_000281). Source database: https://glytoucan.org/\n\nDescription Domain\n   Keywords\n   - Glycan\n   - GlyTouCan Accession\n   - IUPAC Extended\n\n   Pipeline Steps\n   - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/glycan_masterlist.csv\n      Name: names.tsv\n      URI: https:/data.glygen.org/ln2downloads/glytoucan/2025_03_05/export/names.tsv\n      Name: subsumption.tsv\n      URI: https:/data.glygen.org/ln2downloads/glytoucan/2025_03_05/export/subsumption.tsv\n   Output Subdomain\n      Name: glycan_sequences_iupac_extended.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/glycan_sequences_iupac_extended.csv\n      Name: glycan_sequences_iupac_extended.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/glycan_sequences_iupac_extended.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"42581\"\n      Name: \"sequence_iupac_extended\"\n     Description: \"Glycan sequence in an IUPAC extended format\"\n      Unique Values: \"42569\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/glycan_sequences_iupac_extended.csv"
}