{
    "bcoid": "GLY_000258",
    "title": "Homolog Clusters",
    "description": "The Homolog Clusters dataset contains homologs of organisms present in GlyGen mapped to UniProtKB canonical ...",
    "filename_list": "protein_homolog_clusters.csv",
    "filename": "protein_homolog_clusters.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Mus musculus",
            "Homo sapiens",
            "Rattus norvegicus",
            "Saccharomyces cerevisiae S288C",
            "Drosophila melanogaster",
            "Severe acute respiratory syndrome coronavirus 2",
            "Severe acute respiratory syndrome-related coronavirus",
            "Hepatitis c virus (isolate h77)",
            "Hepatitis C virus (isolate Japanese)",
            "Danio rerio"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Homologs"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "FB:FBgn00331...",
                "Q8SYQ8-1..."
            ],
            [
                "FB:FBgn00331...",
                "P0C7P0-1..."
            ]
        ],
        "headers": [
            "homolog_clus...",
            "uniprotkb_ca..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "homolog_cluster_id"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "tax_id"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                }
            ],
            [
                "FB:FBgn0033100",
                "Q8SYQ8-1",
                "7227",
                "protein_xref_agr_homologset",
                "FB:FBgn0033100"
            ],
            [
                "FB:FBgn0033100",
                "P0C7P0-1",
                "9606",
                "protein_xref_agr_homologset",
                "FB:FBgn0033100"
            ]
        ]
    },
    "readme": "Name\n   - Homolog Clusters\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - 2019-09-06T14:06:38.985197\n\nModified on\n   - 2025-03-05T15:54:11.343Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Not Applicable []\n\nChecksum\n   - \n\nUsability Domain\n   - The Homolog Clusters dataset contains homologs of organisms present in GlyGen mapped to UniProtKB canonical accessions. The homologs data is downloaded from OMA browser and the Alliance of Genome Resources (AGR). If you use this dataset please provide proper attribution to OMA Browser, AGR, and GlyGen. \n\nDescription Domain\n   Keywords\n   - homologs\n   - orthologs\n   - AGR\n   - OMA\n\n   Pipeline Steps\n   - Step-1: The script extracts the GlyGen species homolog data from the input files and using xref files, maps the identifiers to UniProtKB canonical accessions. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: protein_homolog_clusters.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/compiled/protein_homolog_clusters.csv\n      Name: arabidopsis_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/arabidopsis_protein_masterlist.csv\n      Name: arabidopsis_protein_transcriptlocus.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/arabidopsis_protein_transcriptlocus.csv\n      Name: arabidopsis_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/arabidopsis_protein_xref_geneid.csv\n      Name: arabidopsis_protein_xref_oma.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/arabidopsis_protein_xref_oma.csv\n      Name: bovine_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/bovine_protein_masterlist.csv\n      Name: bovine_protein_transcriptlocus.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/bovine_protein_transcriptlocus.csv\n      Name: bovine_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/bovine_protein_xref_geneid.csv\n      Name: bovine_protein_xref_oma.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/bovine_protein_xref_oma.csv\n      Name: chicken_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/chicken_protein_masterlist.csv\n      Name: chicken_protein_transcriptlocus.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/chicken_protein_transcriptlocus.csv\n      Name: chicken_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/chicken_protein_xref_geneid.csv\n      Name: chicken_protein_xref_oma.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/chicken_protein_xref_oma.csv\n      Name: dicty_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/dicty_protein_masterlist.csv\n      Name: dicty_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/dicty_protein_xref_geneid.csv\n      Name: dicty_protein_xref_oma.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/dicty_protein_xref_oma.csv\n      Name: fruitfly_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/fruitfly_protein_masterlist.csv\n      Name: fruitfly_protein_transcriptlocus.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/fruitfly_protein_transcriptlocus.csv\n      Name: fruitfly_protein_xref_flybase.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/fruitfly_protein_xref_flybase.csv\n      Name: fruitfly_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/fruitfly_protein_xref_geneid.csv\n      Name: fruitfly_protein_xref_oma.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/fruitfly_protein_xref_oma.csv\n      Name: hamster_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/hamster_protein_masterlist.csv\n      Name: hamster_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/hamster_protein_xref_geneid.csv\n      Name: hamster_protein_xref_oma.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/hamster_protein_xref_oma.csv\n      Name: hcv1a_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/hcv1a_protein_masterlist.csv\n      Name: hcv1b_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/hcv1b_protein_masterlist.csv\n      Name: human_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_protein_masterlist.csv\n      Name: human_protein_transcriptlocus.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_protein_transcriptlocus.csv\n      Name: human_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_protein_xref_geneid.csv\n      Name: human_protein_xref_hgnc.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_protein_xref_hgnc.csv\n      Name: human_protein_xref_oma.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_protein_xref_oma.csv\n      Name: mouse_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/mouse_protein_masterlist.csv\n      Name: mouse_protein_transcriptlocus.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/mouse_protein_transcriptlocus.csv\n      Name: mouse_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/mouse_protein_xref_geneid.csv\n      Name: mouse_protein_xref_mgi.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/mouse_protein_xref_mgi.csv\n      Name: mouse_protein_xref_oma.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/mouse_protein_xref_oma.csv\n      Name: pig_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/pig_protein_masterlist.csv\n      Name: pig_protein_transcriptlocus.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/pig_protein_transcriptlocus.csv\n      Name: pig_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/pig_protein_xref_geneid.csv\n      Name: pig_protein_xref_oma.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/pig_protein_xref_oma.csv\n      Name: rat_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/rat_protein_masterlist.csv\n      Name: rat_protein_transcriptlocus.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/rat_protein_transcriptlocus.csv\n      Name: rat_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/rat_protein_xref_geneid.csv\n      Name: rat_protein_xref_oma.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/rat_protein_xref_oma.csv\n      Name: rat_protein_xref_rgd.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/rat_protein_xref_rgd.csv\n      Name: sarscov1_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/sarscov1_protein_masterlist.csv\n      Name: sarscov1_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/sarscov1_protein_xref_geneid.csv\n      Name: sarscov2_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/sarscov2_protein_masterlist.csv\n      Name: sarscov2_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/sarscov2_protein_xref_geneid.csv\n      Name: yeast_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/yeast_protein_masterlist.csv\n      Name: yeast_protein_transcriptlocus.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/yeast_protein_transcriptlocus.csv\n      Name: yeast_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/yeast_protein_xref_geneid.csv\n      Name: yeast_protein_xref_oma.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/yeast_protein_xref_oma.csv\n      Name: yeast_protein_xref_sgd.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/yeast_protein_xref_sgd.csv\n      Name: zebrafish_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/zebrafish_protein_masterlist.csv\n      Name: zebrafish_protein_xref_geneid.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/zebrafish_protein_xref_geneid.csv\n      Name: zebrafish_protein_xref_oma.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/zebrafish_protein_xref_oma.csv\n      Name: zebrafish_protein_xref_zfin.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/zebrafish_protein_xref_zfin.csv\n      Name: species_info.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/misc/species_info.csv\n   Output Subdomain\n      Name: protein_homolog_clusters.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/protein_homolog_clusters.csv\n      Name: protein_homolog_clusters.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/protein_homolog_clusters.stat.csv\n\nFields\n      Name: \"homolog_cluster_id\"\n     Description: \"NA\"\n      Unique Values: \"114949\"\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"131871\"\n      Name: \"tax_id\"\n     Description: \"NCBI Taxonomy database Identifier\"\n      Unique Values: \"16\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"4\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"114948\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/protein_homolog_clusters.csv"
}