{
    "bcoid": "GLY_000029",
    "title": "Gene Expression (Cancer)",
    "description": "Gene Expression (Cancer) dataset contains the gene expression information in cancers from BioXpress database. ...",
    "filename_list": "human_protein_expression_disease.csv",
    "filename": "human_protein_expression_disease.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Cancer Gene Expression"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P47870-2...",
                "Yes..."
            ],
            [
                "Q6UX53-1...",
                "Yes..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "significance..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "significance"
                },
                {
                    "type": "string",
                    "label": "direction"
                },
                {
                    "type": "string",
                    "label": "do_id"
                },
                {
                    "type": "string",
                    "label": "do_name"
                },
                {
                    "type": "string",
                    "label": "parent_doid"
                },
                {
                    "type": "string",
                    "label": "parent_doname"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                }
            ],
            [
                "P47870-2",
                "Yes",
                "up",
                "1781",
                "DOID:1781 / thyroid cancer",
                "1781",
                "DOID:1781 / thyroid cancer",
                "protein_xref_bioxpress",
                "P47870"
            ],
            [
                "Q6UX53-1",
                "Yes",
                "up",
                "1781",
                "DOID:1781 / thyroid cancer",
                "1781",
                "DOID:1781 / thyroid cancer",
                "protein_xref_bioxpress",
                "Q6UX53"
            ]
        ]
    },
    "readme": "Name\n   - Gene Expression (Cancer)\n\nVersion\n   - v-2.9.1\n\nCreated on\n  - 2019-01-23T17:21:05.896478\n\nModified on\n   - 2024-05-17T11:23:49.733Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Not Applicable []\n\nChecksum\n   - \n\nUsability Domain\n   - Gene Expression (Cancer) dataset contains the gene expression information in cancers from BioXpress database. The GlyGen interface shows the gene expression (cancer) information for select cancer types/DOIDs. For more cancer types/DOIDs please refer - https://hive.biochemistry.gwu.edu/bioxpress. If you use this dataset please give proper attribution to BioXpress and GlyGen.\n\nDescription Domain\n   Keywords\n   - gene expression (cancer)\n   - Disease Ontology\n   - differential expression\n   - BioXpress\n\n   Pipeline Steps\n   - Step-1: The script extracts the expression information and maps the UniProtKB accession/ gene name to UniProtKB canonical accession\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: human_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_protein_masterlist.csv\n      Name: human_cancer_mRNA_expression_per_tissue_glygen.csv\n      URI: https:/data.glygen.org/ln2downloads/bioxpress/2021_08/human_cancer_mRNA_expression_per_tissue_glygen.csv\n   Output Subdomain\n      Name: human_protein_expression_disease.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_protein_expression_disease.csv\n      Name: human_protein_expression_disease.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/human_protein_expression_disease.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"19646\"\n      Name: \"significance\"\n     Description: \"\"Significant differential expression of the gene that can be either `Yes` or `No`\"\n      Unique Values: \"2\"\n      Name: \"direction\"\n     Description: \"\"Expression trend of the gene that can be either `Up` or `Down`\"\n      Unique Values: \"2\"\n      Name: \"do_id\"\n     Description: \"Disease Ontology identifier\"\n      Unique Values: \"12\"\n      Name: \"do_name\"\n     Description: \"Disease Ontology term or name for the disease assigned to the Disease Ontology identifier\"\n      Unique Values: \"12\"\n      Name: \"parent_doid\"\n     Description: \"Disease Ontology identifier of the parent disease\"\n      Unique Values: \"12\"\n      Name: \"parent_doname\"\n     Description: \"Disease Ontology name of the parent disease\"\n      Unique Values: \"12\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"19646\"",
    "downloadurl": "/ln2data/releases/data/v-2.9.1/reviewed/human_protein_expression_disease.csv"
}