{
    "object_id": "https://biocomputeobject.org/GLY_001029/v-2.9.1",
    "etag": "c94b17c457c34953173241d14475d734",
    "spec_version": "1.3.0",
    "provenance_domain": {
        "name": "Chicken Protein Enzyme Annotation (UniProtKB)",
        "version": "v-2.9.1",
        "license": "https://creativecommons.org/licenses/by/4.0/",
        "modified": "2024-05-21T14:49:34.499Z",
        "contributors": [
            {
                "name": "Jeet Vora",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "jeetvora@gwu.edu"
            },
            {
                "name": "Robel Kahsay",
                "affiliation": "The George Washington University",
                "contribution": [
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                ],
                "email": "rykahsay@gwu.edu"
            },
            {
                "name": "Maria Martin",
                "affiliation": "EMBL-EBI-UniProt",
                "contribution": [
                    "contributedBy"
                ],
                "email": "martin@ebi.ac.uk"
            },
            {
                "name": "Preethi Vasudev",
                "affiliation": "EMBL-EBI-UniProt",
                "contribution": [
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                ],
                "email": "pvasudev@ebi.ac.uk"
            },
            {
                "name": "Karina Martinez",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "karinamartinez@gwu.edu"
            },
            {
                "name": "Luke Johnson",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "luke.johnson@email.gwu.edu"
            },
            {
                "name": "Urnisha Bhuiyan",
                "affiliation": "The George Washington University",
                "contribution": [
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                ],
                "email": "sbhuiyan28@email.gwu.edu"
            },
            {
                "name": "Cyrus Au-Yeung",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "cyruschauyeung@gwu.edu"
            },
            {
                "name": "Jingyue Wu",
                "affiliation": "The George Washington University",
                "contribution": [
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                ],
                "email": "jingyue.wu@email.gwu.edu"
            },
            {
                "name": "Kate Warner",
                "affiliation": "The George Washington University",
                "contribution": [
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                ],
                "email": "k.warner1@gwu.edu"
            }
        ]
    },
    "usability_domain": [
        "The Chicken Protein Enzyme Annotation (UniProtKB) dataset contains Gallus gallus [taxid:9031] enzyme annotations for UniProtKB canonical accessions. The dataset contains ec numbers and enzyme activity that describes the enzymatic reactions. If you use this dataset please give proper attribution to UniProtKB and GlyGen."
    ],
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                        "category_value": "Gallus gallus",
                        "category_name": "species"
                    },
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                        "category_value": "Protein",
                        "category_name": "molecule"
                    },
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                    },
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                        "category_name": "status"
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                        "category_value": "internal",
                        "category_name": "scope"
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                ]
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    "description_domain": {
        "keywords": [
            "enzyme annotation",
            "enzyme ",
            "UniProtKB",
            "enzyme activity",
            "EC number"
        ],
        "pipeline_steps": [
            {
                "name": "make-protein-dataset.py",
                "step_number": 1,
                "input_list": [],
                "description": "The script extracts the enzyme annotation triples from the triplestore for the UniProtKB canonical sequnces asnd extracts as a dataset in a csv format",
                "prerequisite": [],
                "output_list": []
            }
        ]
    },
    "execution_domain": {
        "external_data_endpoints": [],
        "environment_variables": {},
        "script_driver": "manual",
        "software_prerequisites": [
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                "name": "Python",
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ],
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py",
                    "filename": "make-protein-dataset.py"
                }
            }
        ]
    },
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "filename": "uniprot-proteome-gallus-gallus.nt",
                    "uri": "https:/data.glygen.org/ln2downloads/ebi/2025_05_20/uniprot-proteome-gallus-gallus.nt"
                }
            }
        ],
        "output_subdomain": [
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/chicken_protein_enzyme_annotation_uniprotkb.csv",
                    "filename": "chicken_protein_enzyme_annotation_uniprotkb.csv"
                }
            },
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.9.1/reviewed/chicken_protein_enzyme_annotation_uniprotkb.stat.csv",
                    "filename": "chicken_protein_enzyme_annotation_uniprotkb.stat.csv"
                }
            }
        ]
    },
    "error_domain": {}
}