{ "uniprot_canonical_ac": "P0DTC2-1", "uniprot_ac": "P0DTC2", "uniprot_id": "SPIKE_SARS2", "mass": { "chemical_mass": 141178.0, "monoisotopic_mass": 141178.0 }, "refseq": { "ac": "YP_009724390", "name": "surface glycoprotein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/YP_009724390" }, "gene_names": [ { "name": "S", "resource": "UniProtKB", "type": "recommended", "url": "https://www.uniprot.org/uniprot/P0DTC2", "id": "P0DTC2" }, { "name": "2", "resource": "UniProtKB", "type": "synonym", "url": "https://www.uniprot.org/uniprot/P0DTC2", "id": "P0DTC2" } ], "protein_names": [ { "name": "Spike glycoprotein", "resource": "UniProtKB", "type": "recommended", "url": "https://www.uniprot.org/uniprotkb/P0DTC2/entry#names_and_taxonomy", "id": "P0DTC2" }, { "name": "E2", "resource": "UniProtKB", "type": "synonym", "url": "https://www.uniprot.org/uniprotkb/P0DTC2/entry#names_and_taxonomy", "id": "P0DTC2" }, { "name": "Peplomer protein", "resource": "UniProtKB", "type": "synonym", "url": "https://www.uniprot.org/uniprotkb/P0DTC2/entry#names_and_taxonomy", "id": "P0DTC2" }, { "name": "S glycoprotein", "resource": "UniProtKB", "type": "synonym", "url": "https://www.uniprot.org/uniprotkb/P0DTC2/entry#names_and_taxonomy", "id": "P0DTC2" }, { "name": "surface glycoprotein", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/YP_009724390", "id": "YP_009724390" } ], "function": [ { "annotation": "Attaches the virion to the cell membrane by interacting with host receptor, initiating the infection. The major receptor is host ACE2 (PubMed:32142651, PubMed:32155444, PubMed:33607086). When S2/S2' has been cleaved, binding to the receptor triggers direct fusion at the cell membrane (PubMed:34561887). When S2/S2' has not been cleaved, binding to the receptor results in internalization of the virus by endocytosis leading to fusion of the virion membrane with the host endosomal membrane (PubMed:32075877, PubMed:32221306). Alternatively, may use NRP1/NRP2 (PubMed:33082294, PubMed:33082293) and integrin as entry receptors (PubMed:35150743). The use of NRP1/NRP2 receptors may explain the tropism of the virus in human olfactory epithelial cells, which express these molecules at high levels but ACE2 at low levels (PubMed:33082293). The stalk domain of S contains three hinges, giving the head unexpected orientational freedom (PubMed:32817270).", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2#function" }, { "database": "PubMed", "id": "32075877", "url": "https://glygen.org/publication/PubMed/32075877" }, { "database": "HAMAP", "id": "MF_04099", "url": "https://hamap.expasy.org/signature/MF_04099" }, { "database": "PubMed", "id": "32155444", "url": "https://glygen.org/publication/PubMed/32155444" }, { "database": "PubMed", "id": "32142651", "url": "https://glygen.org/publication/PubMed/32142651" }, { "database": "PubMed", "id": "32221306", "url": "https://glygen.org/publication/PubMed/32221306" }, { "database": "PubMed", "id": "34561887", "url": "https://glygen.org/publication/PubMed/34561887" }, { "database": "PubMed", "id": "35150743", "url": "https://glygen.org/publication/PubMed/35150743" }, { "database": "PubMed", "id": "33082294", "url": "https://glygen.org/publication/PubMed/33082294" }, { "database": "PubMed", "id": "33082293", "url": "https://glygen.org/publication/PubMed/33082293" }, { "database": "PubMed", "id": "32817270", "url": "https://glygen.org/publication/PubMed/32817270" } ] }, { "annotation": "Precursor of the fusion protein processed in the biosynthesis of the S protein and the formation of virus particle. Mediates fusion of the virion and cellular membranes by functioning as a class I viral fusion protein. Contains two viral fusion peptides that are unmasked after cleavage. The S2/S2' cleavage occurs during virus entry at the cell membrane by host TMPRSS2 (PubMed:32142651) or during endocytosis by host CSTL (PubMed:32703818, PubMed:34159616). In either case, this triggers an extensive and irreversible conformational change leading to fusion of the viral envelope with the cellular cytoplasmic membrane, releasing viral genomic RNA into the host cell cytoplasm (PubMed:34561887). Under the current model, the protein has at least three conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During fusion of the viral and target cell membranes, the coiled coil regions (heptad repeats) adopt a trimer-of-hairpins structure and position the fusion peptide in close proximity to the C-terminal region of the ectodomain. Formation of this structure appears to promote apposition and subsequent fusion of viral and target cell membranes.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2#function" }, { "database": "HAMAP", "id": "MF_04099", "url": "https://hamap.expasy.org/signature/MF_04099" }, { "database": "PubMed", "id": "34561887", "url": "https://glygen.org/publication/PubMed/34561887" }, { "database": "PubMed", "id": "32703818", "url": "https://glygen.org/publication/PubMed/32703818" }, { "database": "PubMed", "id": "34159616", "url": "https://glygen.org/publication/PubMed/34159616" } ] }, { "annotation": "Subunit of the fusion protein that is processed upon entry into the host cell. Mediates fusion of the virion and cellular membranes by functioning as a class I viral fusion protein. Contains a viral fusion peptide that is unmasked after S2 cleavage. This cleavage can occur at the cell membrane by host TMPRSS2 or during endocytosis by host CSTL (PubMed:32703818, PubMed:34159616). In either case, this triggers an extensive and irreversible conformational change that leads to fusion of the viral envelope with the cellular cytoplasmic membrane, releasing viral genomic RNA into the host cell cytoplasm (PubMed:34561887). Under the current model, the protein has at least three conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During fusion of the viral and target cell membranes, the coiled coil regions (heptad repeats) adopt a trimer-of-hairpins structure and position the fusion peptide in close proximity to the C-terminal region of the ectodomain. Formation of this structure appears to promote apposition and subsequent fusion of viral and target cell membranes.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2#function" }, { "database": "HAMAP", "id": "MF_04099", "url": "https://hamap.expasy.org/signature/MF_04099" }, { "database": "PubMed", "id": "34561887", "url": "https://glygen.org/publication/PubMed/34561887" }, { "database": "PubMed", "id": "32703818", "url": "https://glygen.org/publication/PubMed/32703818" }, { "database": "PubMed", "id": "34159616", "url": "https://glygen.org/publication/PubMed/34159616" } ] } ], "disease": [], "snv": [], "mutagenesis": [ { "start_pos": 121, "end_pos": 121, "sequence_org": "N", "sequence_mut": "Q", "comment": "Partial loss of biliverdin affinity.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "33888467", "url": "https://glygen.org/publication/PubMed/33888467" } ] }, { "start_pos": 1269, "end_pos": 1269, "sequence_org": "K", "sequence_mut": "A", "comment": "Complete loss of COPI binding and increase in cell fusion.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "34504087", "url": "https://glygen.org/publication/PubMed/34504087" } ] }, { "start_pos": 1271, "end_pos": 1271, "sequence_org": "H", "sequence_mut": "K", "comment": "Improved COPI binding, reduced cell fusion and reduced levels of S1/S2 cleavage.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "34504087", "url": "https://glygen.org/publication/PubMed/34504087" } ] }, { "start_pos": 190, "end_pos": 190, "sequence_org": "R", "sequence_mut": "K", "comment": "Partial loss of biliverdin affinity.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "33888467", "url": "https://glygen.org/publication/PubMed/33888467" } ] }, { "start_pos": 234, "end_pos": 234, "sequence_org": "N", "sequence_mut": "Q", "comment": "Increased resistance to neutralizing antibodies.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "32730807", "url": "https://glygen.org/publication/PubMed/32730807" } ] }, { "start_pos": 331, "end_pos": 331, "sequence_org": "N", "sequence_mut": "Q", "comment": "Reduced viral infectivity.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "32730807", "url": "https://glygen.org/publication/PubMed/32730807" } ] }, { "start_pos": 343, "end_pos": 343, "sequence_org": "N", "sequence_mut": "Q", "comment": "Reduced viral infectivity.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "32730807", "url": "https://glygen.org/publication/PubMed/32730807" } ] }, { "start_pos": 452, "end_pos": 452, "sequence_org": "L", "sequence_mut": "R", "comment": "Increased resistance to neutralizing antibodies. Decreases HLA binding to NF9 epitope. Increased binding affinity to human ACE2.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "32730807", "url": "https://glygen.org/publication/PubMed/32730807" }, { "database": "PubMed", "id": "34171266", "url": "https://glygen.org/publication/PubMed/34171266" } ] }, { "start_pos": 453, "end_pos": 453, "sequence_org": "Y", "sequence_mut": "F", "comment": "Decreased HLA binding to NF9 epitope. Increased binding affinity to human ACE2.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "34171266", "url": "https://glygen.org/publication/PubMed/34171266" } ] }, { "start_pos": 475, "end_pos": 475, "sequence_org": "A", "sequence_mut": "V", "comment": "Increased resistance to neutralizing antibodies.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "32730807", "url": "https://glygen.org/publication/PubMed/32730807" } ] }, { "start_pos": 483, "end_pos": 483, "sequence_org": "V", "sequence_mut": "A", "comment": "Increased resistance to neutralizing antibodies.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "32730807", "url": "https://glygen.org/publication/PubMed/32730807" } ] }, { "start_pos": 484, "end_pos": 484, "sequence_org": "E", "sequence_mut": "D", "comment": "Increased replication in human TMEM106B overexpressing cells.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "37421949", "url": "https://glygen.org/publication/PubMed/37421949" } ] }, { "start_pos": 490, "end_pos": 490, "sequence_org": "F", "sequence_mut": "L", "comment": "Increased resistance to neutralizing antibodies and human covalescent sera neutralization.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "32730807", "url": "https://glygen.org/publication/PubMed/32730807" } ] }, { "start_pos": 493, "end_pos": 493, "sequence_org": "Q", "sequence_mut": "N", "comment": "Reduced host ACE2-binding affinity in vitro.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "32225175", "url": "https://glygen.org/publication/PubMed/32225175" } ] }, { "start_pos": 493, "end_pos": 493, "sequence_org": "Q", "sequence_mut": "Y", "comment": "Reduced host ACE2-binding affinity in vitro.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "32225175", "url": "https://glygen.org/publication/PubMed/32225175" } ] }, { "start_pos": 501, "end_pos": 501, "sequence_org": "N", "sequence_mut": "T", "comment": "Reduced host ACE2-binding affinity in vitro.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "32225175", "url": "https://glygen.org/publication/PubMed/32225175" } ] }, { "start_pos": 501, "end_pos": 501, "sequence_org": "N", "sequence_mut": "Y", "comment": "Increased binding affinity to human ACE2.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "34171266", "url": "https://glygen.org/publication/PubMed/34171266" } ] }, { "start_pos": 519, "end_pos": 519, "sequence_org": "H", "sequence_mut": "P", "comment": "Increased resistance to human covalescent sera neutralization.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "32730807", "url": "https://glygen.org/publication/PubMed/32730807" } ] }, { "start_pos": 614, "end_pos": 614, "sequence_org": "D", "sequence_mut": "G", "comment": "Increase of pseudotyped VSV particle production ex vivo. Increase of viral load in hamster upper respiratory tract. Produces more infectious particles when cultured in primary human epithelial cells; increases replication and transmissibility in hamsters and ferrets.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "32697968", "url": "https://glygen.org/publication/PubMed/32697968" }, { "database": "PubMed", "id": "33636719", "url": "https://glygen.org/publication/PubMed/33636719" }, { "database": "PubMed", "id": "33106671", "url": "https://glygen.org/publication/PubMed/33106671" } ] }, { "start_pos": 673, "end_pos": 673, "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on O-glycosylation by host GALNT1.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "34732583", "url": "https://glygen.org/publication/PubMed/34732583" } ] }, { "start_pos": 676, "end_pos": 676, "sequence_org": "T", "sequence_mut": "A", "comment": "Partial loss of O-glycosylation by host GALNT1.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "34732583", "url": "https://glygen.org/publication/PubMed/34732583" } ] }, { "start_pos": 678, "end_pos": 678, "sequence_org": "T", "sequence_mut": "A", "comment": "Complete loss of O-glycosylation by host GALNT1.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "34732583", "url": "https://glygen.org/publication/PubMed/34732583" } ] }, { "start_pos": 679, "end_pos": 684, "sequence_org": "NSPRRA", "sequence_mut": "IL", "comment": "About 50% stronger entry efficiency in Vero E6 cells while 30% weaker entry efficiency in hACE2-expressing BHK cells.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "32155444", "url": "https://glygen.org/publication/PubMed/32155444" } ] }, { "start_pos": 680, "end_pos": 680, "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on O-glycosylation by host GALNT1.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "34732583", "url": "https://glygen.org/publication/PubMed/34732583" } ] }, { "start_pos": 681, "end_pos": 681, "sequence_org": "P", "sequence_mut": "A", "comment": "Complete loss of O-glycosylation by host GALNT1.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "34732583", "url": "https://glygen.org/publication/PubMed/34732583" } ] }, { "start_pos": 681, "end_pos": 681, "sequence_org": "P", "sequence_mut": "H", "comment": "Complete loss of O-glycosylation by host GALNT1.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "34732583", "url": "https://glygen.org/publication/PubMed/34732583" } ] }, { "start_pos": 681, "end_pos": 681, "sequence_org": "P", "sequence_mut": "R", "comment": "Complete loss of O-glycosylation by host GALNT1.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "34732583", "url": "https://glygen.org/publication/PubMed/34732583" } ] }, { "start_pos": 681, "end_pos": 684, "sequence_org": "PRRA", "sequence_mut": "RRRK", "comment": "Optimized cleavage by host furin.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "32362314", "url": "https://glygen.org/publication/PubMed/32362314" } ] }, { "start_pos": 682, "end_pos": 684, "sequence_org": "RRA", "sequence_mut": "", "comment": "Complete loss of cleavage by host furin.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "32362314", "url": "https://glygen.org/publication/PubMed/32362314" } ] }, { "start_pos": 682, "end_pos": 685, "sequence_org": "RRAR", "sequence_mut": "SRAG", "comment": "Stabilization in prefusion state (in vaccine Ad26.COV2.S/Janssen Pharmaceutical).", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "34322129", "url": "https://glygen.org/publication/PubMed/34322129" } ] }, { "start_pos": 684, "end_pos": 684, "sequence_org": "A", "sequence_mut": "K", "comment": "Partial improvement of cleavage by host furin.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "32703818", "url": "https://glygen.org/publication/PubMed/32703818" } ] }, { "start_pos": 684, "end_pos": 684, "sequence_org": "A", "sequence_mut": "R", "comment": "Partial improvement of cleavage by host furin.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "32703818", "url": "https://glygen.org/publication/PubMed/32703818" } ] }, { "start_pos": 69, "end_pos": 70, "sequence_org": "HV", "sequence_mut": "", "comment": "Increased incorporation of cleaved spike into virions.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "34166617", "url": "https://glygen.org/publication/PubMed/34166617" } ] }, { "start_pos": 986, "end_pos": 987, "sequence_org": "KV", "sequence_mut": "PP", "comment": "Stabilization in prefusion state (in vaccine BNT162b2/Pfizer-Biontech, vaccine mRNA-1273/Moderna, vaccine Ad26.COV2.S/Janssen Pharmaceutical).", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { 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"site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 343, "start_aa": "Asn", "end_pos": 343, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn343", "evidence": [ { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" }, { "id": "2839", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2839" } ], "filter_code": "00100000000000000000.0000000.00010000000000.1000000.1100000000.0101100011111101.00010.01100" }, { "glytoucan_ac": "G14889BN", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 343, "start_aa": "Asn", "end_pos": 343, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn343", 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Antibody L243. 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Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 603, "start_aa": "Asn", "end_pos": 603, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn603", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" }, { "id": "33064451", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33064451" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1021/acs.analchem.0c03301" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.0101000011111101.00010.01000" }, { "glytoucan_ac": "G28681TP", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides before enrichment (trypsin digestion)", "start_pos": 603, "start_aa": "Asn", "end_pos": 603, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn603", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" }, { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" } ], "filter_code": "00100000000000000000.0000000.00000000001000.1000000.1100000000.0101110111111111.00010.01000" }, { "glytoucan_ac": "G31852PQ", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 603, "start_aa": "Asn", "end_pos": 603, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn603", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" }, { "id": "33064451", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33064451" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1021/acs.analchem.0c03301" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.1101110111111110.00010.01000" }, { "glytoucan_ac": "G33556XM", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "S1-LC", "start_pos": 603, "start_aa": "Asn", "end_pos": 603, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn603", "evidence": [ { "id": "33064451", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33064451" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1021/acs.analchem.0c03301" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0010000.1110100000.0000000001110100.00100.01000" }, { "glytoucan_ac": "G35029YA", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides before enrichment (trypsin digestion)", "start_pos": 603, "start_aa": "Asn", "end_pos": 603, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn603", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" }, { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" } ], "filter_code": "00100000000000000000.0000000.00000000001000.0100000.1100000000.0101100111111101.00010.01000" }, { "glytoucan_ac": "G39446WN", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 603, "start_aa": "Asn", "end_pos": 603, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn603", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" }, { "id": "33064451", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33064451" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1021/acs.analchem.0c03301" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.0101100011111101.00010.01000" }, { "glytoucan_ac": "G41247ZX", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 603, "start_aa": "Asn", "end_pos": 603, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn603", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" }, { "id": "33064451", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33064451" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1021/acs.analchem.0c03301" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.1111110111111110.00010.01000" }, { "glytoucan_ac": "G44211QA", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 603, "start_aa": "Asn", "end_pos": 603, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn603", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0010000.1110000000.0101000011111101.00010.01000" }, { "glytoucan_ac": "G44953PJ", "type": "N-linked", "subtype": "other", "prediction_tool": "", 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"reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides before enrichment (trypsin digestion)", "start_pos": 603, "start_aa": "Asn", "end_pos": 603, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn603", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" }, { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" } ], "filter_code": "00100000000000000000.0000000.00000000001000.1000000.1100000000.0101100111111111.00010.01000" }, { "glytoucan_ac": "G54417MJ", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "S1-AC", "start_pos": 603, "start_aa": "Asn", "end_pos": 603, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn603", "evidence": [ { "id": "33064451", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33064451" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1021/acs.analchem.0c03301" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0010000.1110100000.0001000001101100.00100.01000" }, { "glytoucan_ac": "G57317CE", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides before enrichment (trypsin digestion)", "start_pos": 603, "start_aa": "Asn", "end_pos": 603, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn603", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" }, { "id": "33064451", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33064451" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1021/acs.analchem.0c03301" } ], "filter_code": "00100000000000000000.0000000.00000000001000.0100000.1100000000.0101110111111100.00010.01000" }, { "glytoucan_ac": "G57776ZU", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], 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Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0010000.1110100000.0101000011111101.00100.01000" }, { "glytoucan_ac": "G10256JP", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "2840", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2840" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1110000000.0101100011111101.00010.01000" }, { "glytoucan_ac": "G10339FR", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" }, { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" } ], "filter_code": "00100000000000000000.0000000.00000000001000.0100000.1110000000.0101100111111100.00010.01000" }, { "glytoucan_ac": "G15486FH", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" }, { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1110000000.0101100011111101.00010.01000" }, { "glytoucan_ac": "G16407EV", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides with noted commentS-G-before-R1", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" }, { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1110000000.0101100111111100.00010.01000" }, { "glytoucan_ac": "G20956ZV", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Glycan database GlycomeDB; gLabel embedded in pGlyco2.0; Byonic (N-glycan 38 insect database)", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" } ], "filter_code": "00100000000000000000.0000000.00000000001000.0100000.1110000000.0101110111111101.00010.01000" }, { "glytoucan_ac": "G21726WW", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides with noted commentS-G-after-R2", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" } ], "filter_code": "00100000000000000000.0000000.00000000001000.0100000.1110000000.0100100001111100.00010.01000" }, { "glytoucan_ac": "G22040QI", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" }, { "id": "2839", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2839" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0010000.1110000000.0000000000000101.00010.01000" }, { "glytoucan_ac": "G23453IV", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "2840", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2840" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.0101100011110101.00010.01000" }, { "glytoucan_ac": "G25637MV", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "2839", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2839" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1110000000.0101100011111100.00010.01000" }, { "glytoucan_ac": "G25987BV", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" } ], "filter_code": "00100000000000000000.0000000.00000000001000.0100000.1110000000.0101110111111101.00010.01000" }, { "glytoucan_ac": "G26759AS", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" }, { "id": "2839", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2839" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0010000.1100000000.0001000001000100.00010.01000" }, { "glytoucan_ac": "G27622TD", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides with noted commentS-G-after-R1", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1110000000.0000000001101101.00010.01000" }, { "glytoucan_ac": "G28541PG", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.0101000011111101.00010.01000" }, { "glytoucan_ac": "G28681TP", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Glycan database GlycomeDB; gLabel embedded in pGlyco2.0; Byonic (N-glycan 38 insect database)", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" } ], "filter_code": "00100000000000000000.0000000.00000000001000.1000000.1100000000.0101110111111111.00010.01000" }, { "glytoucan_ac": "G28997IA", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides with noted commentS-G-after-R1", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" } ], "filter_code": "00100000000000000000.0000000.00000000001000.0100000.1110000000.0000000001110001.00010.01000" }, { "glytoucan_ac": "G31852PQ", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.1101110111111110.00010.01000" }, { "glytoucan_ac": "G32104JU", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "2839", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2839" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.0000000001000100.00001.01000" }, { "glytoucan_ac": "G35029YA", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides with noted commentS-G-before-R1", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" }, { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" } ], "filter_code": "00100000000000000000.0000000.00000000001000.0100000.1100000000.0101100111111101.00010.01000" }, { "glytoucan_ac": "G39188ZX", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "32363391", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32363391" }, { "id": "2838", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2838" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "2840", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2840" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.1111100011111110.00010.01000" }, { "glytoucan_ac": "G39446WN", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.0101100011111101.00010.01000" }, { "glytoucan_ac": "G41247ZX", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": 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"https://glygen.org/publication/PubMed/32518941" }, { "id": "2839", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2839" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1110000000.0101000011101101.00010.01000" }, { "glytoucan_ac": "G45504EY", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "SARS-CoV-2 S protein", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "32363391", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32363391" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1101/2020.04.01.020966", "database": "DOI", "url": 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Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.1101110111111110.00010.01000" }, { "glytoucan_ac": "G64527OM", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "2840", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2840" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.1101100011111110.00010.01000" }, { "glytoucan_ac": "G66538GV", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "2840", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2840" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.0101100011111100.00010.01000" }, { "glytoucan_ac": "G67324HN", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1110100000.0101000001101100.00100.01000" }, { "glytoucan_ac": "G68318VE", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. 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Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "33064451", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33064451" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1021/acs.analchem.0c03301" } ], "filter_code": "00100000000000000000.0000000.00000000001000.0100000.1110000000.0101100011111101.00010.01000" }, { "glytoucan_ac": "G88725PI", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" } ], "filter_code": "00100000000000000000.0000000.00000000001000.0100000.1110000000.0101100011111101.00010.01000" }, { "glytoucan_ac": "G92050GC", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides with noted commentS-G-after-R1", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.0101110111111110.00010.01000" }, { "glytoucan_ac": "G92597CK", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides with noted commentS-G-after-R1", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1110000000.0000100001111101.00010.01000" }, { "glytoucan_ac": "G93579XB", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Glycan database GlycomeDB; gLabel embedded in pGlyco2.0; Byonic (N-glycan 38 insect database)", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" } ], "filter_code": "00100000000000000000.0000000.00000000001000.1000000.1110000000.0101100111111100.00010.01000" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides with noted commentS-T-after-R1", "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" }, { "id": "33064451", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33064451" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1021/acs.analchem.0c03301" }, { "id": "P0DTC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprot/P0DTC2#ptm_processing" }, { "id": "MF_04099", "database": "HAMAP-Rule", "url": "https://hamap.expasy.org/rule/MF_04099" }, { "id": "32155444", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32155444" }, { "id": "32363391", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32363391" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "32979942", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32979942" }, { "id": "34631661", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34631661" }, { "id": "GLY_001399", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001399" } ], "mining_tool": "GlycoSiteMiner", "mining_tool_list": [ { "label": "GlycoSiteMiner", "url": "https://github.com/glygener/glycositeminer" } ], "filter_code": "00100000000000000000.00010000000000.01.01000" }, { "glytoucan_ac": "G01650EU", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100100000.0101000011111100.00100.01000" }, { "glytoucan_ac": "G02815KT", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" }, { "id": "33064451", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33064451" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1021/acs.analchem.0c03301" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.1101110111111111.00010.01000" }, { "glytoucan_ac": "G03574QJ", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Biological Replicate 1", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1110000000.0101100001101100.00010.01000" }, { "glytoucan_ac": "G05724UK", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "2840", "database": "GlyConnect", "url": 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], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.1101100011111111.00010.01000" }, { "glytoucan_ac": "G08293MJ", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Biological Replicate 3", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0010000.1110100000.0101000011111101.00100.01000" }, { "glytoucan_ac": "G09528DL", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Biological Replicate 1", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0010000.1110100000.0101000001111100.00100.01000" }, { "glytoucan_ac": "G10339FR", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" } ], "filter_code": "00100000000000000000.0000000.00000000001000.0100000.1110000000.0101100111111100.00010.01000" }, { "glytoucan_ac": "G10486CT", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.0101100011111101.00010.01000" }, { "glytoucan_ac": "G10773YW", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "2840", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2840" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0010000.1110100000.0101000001111100.00100.01000" }, { "glytoucan_ac": "G14260UH", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32363391", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32363391" }, { "id": "2838", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2838" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.0101000001110100.00010.01000" }, { "glytoucan_ac": "G14994KB", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "2840", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2840" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1110100000.0101000001111100.00100.01000" }, { "glytoucan_ac": "G15486FH", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1110000000.0101100011111101.00010.01000" }, { "glytoucan_ac": "G16407EV", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Glycan database GlycomeDB; 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Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.0101000011111101.00010.01000" }, { "glytoucan_ac": "G28681TP", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Glycan database GlycomeDB; gLabel embedded in pGlyco2.0; Byonic (N-glycan 38 insect database)", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" } ], "filter_code": "00100000000000000000.0000000.00000000001000.1000000.1100000000.0101110111111111.00010.01000" }, { "glytoucan_ac": "G29880MM", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "2840", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2840" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1110000000.0101100001111100.00010.01000" }, { "glytoucan_ac": "G30799SW", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" }, { "id": "2839", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2839" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0010000.1100000000.0000000001000100.00010.01000" }, { "glytoucan_ac": "G31852PQ", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.1101110111111110.00010.01000" }, { "glytoucan_ac": "G33609NS", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "2840", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2840" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.0101100011111101.00010.01000" }, { "glytoucan_ac": "G34029GR", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Biological Replicate 3", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0010000.1100000000.0101000001100100.00010.01000" }, { "glytoucan_ac": "G35029YA", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Biological Replicate 1", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" } ], "filter_code": "00100000000000000000.0000000.00000000001000.0100000.1100000000.0101100111111101.00010.01000" }, { "glytoucan_ac": "G37399XV", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100100000.0101000011100100.00100.01000" }, { "glytoucan_ac": "G39188ZX", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32363391", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32363391" }, { "id": "2838", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2838" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "2840", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2840" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.1111100011111110.00010.01000" }, { "glytoucan_ac": "G39446WN", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.0101100011111101.00010.01000" }, { "glytoucan_ac": "G41247ZX", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.1111110111111110.00010.01000" }, { "glytoucan_ac": "G46687AB", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "2840", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2840" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1110000000.0101100011111101.00010.01000" }, { "glytoucan_ac": "G50045TK", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "2840", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2840" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.0101100011111101.00010.01000" }, { "glytoucan_ac": "G50073PQ", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Biological Replicate 3", "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" } ], "filter_code": "00100000000000000000.0000000.00000000001000.0100000.1110000000.0000000001101101.00010.01000" }, { "glytoucan_ac": "G53434XO", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Glycan database GlycomeDB; 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Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" }, { "id": "33064451", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33064451" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1021/acs.analchem.0c03301" } ], "filter_code": "00100000000000000000.0000000.00000000001000.0100000.1100000000.0101110111111100.00010.01000" }, { "glytoucan_ac": "G57776ZU", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" }, { "id": "33064451", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33064451" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1021/acs.analchem.0c03301" } ], "filter_code": "00100000000000000000.0000000.00000000001000.0100000.1100000000.0101100011111101.00010.01000" }, { "glytoucan_ac": "G59626AS", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "33064451", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33064451" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1021/acs.analchem.0c03301" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100100000.0101000011111101.00100.01000" }, { "glytoucan_ac": "G59937CP", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" }, { "id": "32363391", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32363391" }, { "id": "10.1101/2020.04.01.020966", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1101/2020.04.01.020966" }, { "id": "33064451", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33064451" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1021/acs.analchem.0c03301" } ], "filter_code": "00100000000000000000.0000000.00000000001000.0100000.1110000000.0101100011111101.00010.01000" }, { "glytoucan_ac": "G60145BJ", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "2840", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2840" }, { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" }, { "id": "2839", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2839" }, { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.0101100011111100.00010.01000" }, { "glytoucan_ac": "G62765YT", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" }, { "id": "33064451", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33064451" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1021/acs.analchem.0c03301" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.1101110111111110.00010.01000" }, { "glytoucan_ac": "G63628AV", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" }, { "id": "2839", "database": "GlyConnect", "url": 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{ "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "2839", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2839" } ], "filter_code": "00100000000000000000.1000000.00010000000000.0100000.1100000000.1101100001111110.00001.01000" }, { "glytoucan_ac": "G66760KM", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", 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Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1110100000.0101000001101100.00100.01000" }, { "glytoucan_ac": "G68318VE", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "32363391", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32363391" }, { "id": "10.1101/2020.04.01.020966", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1101/2020.04.01.020966" }, { "id": "33064451", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33064451" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1021/acs.analchem.0c03301" } ], "filter_code": "00100000000000000000.0000000.00000000001000.0100000.1110000000.0101000011111101.00010.01000" }, { "glytoucan_ac": "G70101JE", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "2839", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2839" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.1101100001111110.00010.01000" }, { "glytoucan_ac": "G72735IY", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "2840", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2840" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.0101000001111101.00010.01000" }, { "glytoucan_ac": "G72787SB", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" } ], "filter_code": "00100000000000000000.0000000.00000000001000.0100000.1100000000.0101100011111101.00010.01000" }, { "glytoucan_ac": "G72790NZ", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.0101000001101100.00010.01000" }, { "glytoucan_ac": "G72791KH", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Biological Replicate 3", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1126/science.abb9983" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1110100000.0101000001110100.00100.01000" }, { "glytoucan_ac": "G74430RZ", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "2840", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2840" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1110000000.0000000001101101.00010.01000" }, { "glytoucan_ac": "G74724QE", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "32518941", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32518941" }, { "id": "2839", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2839" }, { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1110000000.0101100011111101.00010.01000" }, { "glytoucan_ac": "G79568CQ", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "2840", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2840" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.0101000001111100.00010.01000" }, { "glytoucan_ac": "G80475RE", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides with noted commentS-T-before-R1", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" }, { "id": "32366695", "database": "PubMed", "url": 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"evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.1101110111111110.00010.01000" }, { "glytoucan_ac": "G80966KZ", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "2839", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2839" } ], "filter_code": "00100000000000000000.1000000.00010000000000.0100000.1100000000.0101100001111100.10000.01000" }, { "glytoucan_ac": "G81295CK", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "2840", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2840" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.0101100011111101.00010.01000" }, { "glytoucan_ac": "G82020ZR", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "2839", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2839" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100000000.0101100001111100.00001.01000" }, { "glytoucan_ac": "G82119TF", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "2840", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2840" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1110000000.0101100011111101.00010.01000" }, { "glytoucan_ac": "G82364UA", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides with noted commentS-T-before-R1", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1110000000.0100100101111100.00010.01000" }, { "glytoucan_ac": "G82463GQ", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/32366695" }, { "id": "2840", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/2840" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1100100000.0101000011100100.00100.01000" }, { "glytoucan_ac": "G83555HU", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. 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Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1016/j.celrep.2021.109179" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0100000.1110000000.0101000011111101.00010.01000" }, { "glytoucan_ac": "G88374WZ", "type": "N-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "S2P-LC", "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "33064451", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/33064451" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://glygen.org/publication/DOI/10.1021/acs.analchem.0c03301" } ], "filter_code": "00100000000000000000.0000000.00010000000000.0010000.1110100000.0101000011111101.00100.01000" }, { "glytoucan_ac": "G88725PI", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool": "", "prediction_tool_list": [ { "label": "" } ], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. 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Schreiber G, Ikeda T, Nakagawa S, Ueno T, Sato K", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "reference": [ { "type": "PubMed", "id": "34171266", "url": "https://glygen.org/publication/PubMed/34171266" } ] }, { "title": "SARS-CoV-2 immune evasion by the B.1.427/B.1.429 variant of concern.", "journal": "Science (New York, N.Y.)", "date": "2021", "authors": "McCallum M, Bassi J, De Marco A, Chen A, Walls AC, Di Iulio J, Tortorici MA, Navarro MJ, Silacci-Fregni C, Saliba C, Sprouse KR, Agostini M, Pinto D, Culap K, Bianchi S, Jaconi S, Cameroni E, Bowen JE, Tilles SW, Pizzuto MS, Guastalla SB, Bona G, Pellanda AF, Garzoni C, Van Voorhis WC, Rosen LE, Snell G, Telenti A, Virgin HW, Piccoli L, Corti D, Veesler D", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "reference": [ { "type": "PubMed", "id": "34210893", "url": "https://glygen.org/publication/PubMed/34210893" } ] }, { "title": "SARS-CoV-2 Vaccines Based on the Spike Glycoprotein and Implications of New Viral Variants.", "journal": "Frontiers in immunology", "date": "2021", "authors": "Martinez-Flores D, Zepeda-Cervantes J, Cruz-Resendiz A, Aguirre-Sampieri S, Sampieri A, Vaca L", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "reference": [ { "type": "PubMed", "id": "34322129", "url": "https://glygen.org/publication/PubMed/34322129" } ] }, { "title": "Direct Comparison of N-Glycans and Their Isomers Derived from Spike Glycoprotein 1 of MERS-CoV, SARS-CoV-1, and SARS-CoV-2.", "journal": "Journal of proteome research", "date": "2021-09-03", "authors": "Cho Byeong Gwan, Gautam Sakshi, Peng Wenjing, Huang Yifan, Goli Mona, Mechref Yehia", "evidence": [ { "database": "GlyConnect", "id": "2956", "url": "https://glyconnect.expasy.org/browser/proteins/2956" } ], "reference": [ { "type": "PubMed", "id": "34369795", "url": "https://glygen.org/publication/PubMed/34369795" } ] }, { "title": "Sequences in the cytoplasmic tail of SARS-CoV-2 Spike facilitate expression at the cell surface and syncytia formation.", "journal": "Nature communications", "date": "2021", "authors": "Cattin-Ortola J, Welch LG, Maslen SL, Papa G, James LC, Munro S", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "reference": [ { "type": "PubMed", "id": "34504087", "url": "https://glygen.org/publication/PubMed/34504087" } ] }, { "title": "Proteolytic activation of SARS-CoV-2 spike protein.", "journal": "Microbiology and immunology", "date": "2022", "authors": "Takeda M", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "reference": [ { "type": "PubMed", "id": "34561887", "url": "https://glygen.org/publication/PubMed/34561887" } ] }, { "title": "S-acylation controls SARS-CoV-2 membrane lipid organization and enhances infectivity.", "journal": "Developmental cell", "date": "2021", "authors": "Mesquita FS, Abrami L, Sergeeva O, Turelli P, Qing E, Kunz B, Raclot C, Paz Montoya J, Abriata LA, Gallagher T, Dal Peraro M, Trono D, D'Angelo G, van der Goot FG", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "reference": [ { "type": "PubMed", "id": "34599882", "url": "https://glygen.org/publication/PubMed/34599882" } ] }, { "title": "Furin cleavage of the SARS-CoV-2 spike is modulated by O-glycosylation.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2021", "authors": "Zhang L, Mann M, Syed ZA, Reynolds HM, Tian E, Samara NL, Zeldin DC, Tabak LA, Ten Hagen KG", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2#ptm_processing" }, { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "reference": [ { "type": "PubMed", "id": "34732583", "url": "https://glygen.org/publication/PubMed/34732583" } ] }, { "title": "Integrin mediates cell entry of the SARS-CoV-2 virus independent of cellular receptor ACE2.", "journal": "The Journal of biological chemistry", "date": "2022-03", "authors": "Liu Jiamnin, Lu Fan, Chen Yinghua, Plow Edward, Qin Jun", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "reference": [ { "type": "PubMed", "id": "35150743", "url": "https://glygen.org/publication/PubMed/35150743" } ] }, { "title": "The D405N Mutation in the Spike Protein of SARS-CoV-2 Omicron BA.5 Inhibits Spike/Integrins Interaction and Viral Infection of Human Lung Microvascular Endothelial Cells.", "journal": "Viruses", "date": "2023-01-24", "authors": "Bugatti Antonella, Filippini Federica, Messali Serena, Giovanetti Marta, Ravelli Cosetta, Zani Alberto, Ciccozzi Massimo, Caruso Arnaldo, Caccuri Francesca", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "reference": [ { "type": "PubMed", "id": "36851546", "url": "https://glygen.org/publication/PubMed/36851546" } ] }, { "title": "TMEM106B is a receptor mediating ACE2-independent SARS-CoV-2 cell entry.", "journal": "Cell", "date": "2023-08-03", "authors": "Baggen Jim, Jacquemyn Maarten, Persoons Leentje, Vanstreels Els, Pye Valerie E, Wrobel Antoni G, Calvaresi Valeria, Martin Stephen R, Roustan Chlo\u00eb, Cronin Nora B, Reading Eamonn, Thibaut Hendrik Jan, Vercruysse Thomas, Maes Piet, De Smet Frederik, Yee Angie, Nivitchanyong Toey, Roell Marina, Franco-Hernandez Natalia, Rhinn Herve, Mamchak Alusha Andre, Ah Young-Chapon Maxime, Brown Eric, Cherepanov Peter, Daelemans Dirk", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "reference": [ { "type": "PubMed", "id": "37421949", "url": "https://glygen.org/publication/PubMed/37421949" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "P59594-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_id": 694009, "organism": "Severe acute respiratory syndrome-related coronavirus", "sequence": { "sequence": "MFIFLLFLTLTSGSDLDRCTTFDDVQAPNYTQHTSSMRGVYYPDEIFRSDTLYLTQDLFLPFYSNVTGFHTINHTFGNPVIPFKDGIYFAATEKSNVVRGWVFGSTMNNKSQSVIIINNSTNVVIRACNFELCDNPFFAVSKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINITNFRAILTAFSPAQDIWGTSAAAYFVGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVVRFPNITNLCPFGEVFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCYGVSATKLNDLCFSNVYADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDFMGCVLAWNTRNIDATSTGNYNYKYRYLRHGKLRPFERDISNVPFSPDGKPCTPPALNCYWPLNDYGFYTTTGIGYQPYRVVVLSFELLNAPATVCGPKLSTDLIKNQCVNFNFNGLTGTGVLTPSSKRFQPFQQFGRDVSDFTDSVRDPKTSEILDISPCSFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNVFQTQAGCLIGAEHVDTSYECDIPIGAGICASYHTVSLLRSTSQKSIVAYTMSLGADSSIAYSNNTIAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFGGFNFSQILPDPLKPTKRSFIEDLLFNKVTLADAGFMKQYGECLGDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEGKAYFPREGVFVFNGTSWFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKGACSCGSCCKFDEDDSEPVLKGVKLHYT", "length": 1255 }, "evidence": [ { "id": "UniRef50_P0DTC2", "url": "https://www.uniprot.org/uniref/UniRef50_P0DTC2", "database": "UniRef" } ], "glygen_name": "HCoV-SARS", "common_name": "SARS-CoV" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 8, "go_terms": [ { "name": "host cell surface", "id": "GO:0044228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044228", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" }, { "name": "viral envelope", "id": "GO:0019031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019031", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" }, { "name": "virion membrane", "id": "GO:0055036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055036", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" }, { "name": "host cell endoplasmic reticulum-Golgi intermediate compartment membrane", "id": "GO:0044173", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044173", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" }, { "name": "host cell plasma membrane", "id": "GO:0020002", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0020002", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" }, { "name": "host extracellular space", "id": "GO:0043655", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043655", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" }, { "name": "receptor ligand activity", "id": "GO:0048018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048018", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" }, { "name": "host cell surface receptor binding", "id": "GO:0046789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046789", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" }, { "name": "structural constituent of virion", "id": "GO:0039660", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0039660", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 11, "go_terms": [ { "name": "positive regulation of viral entry into host cell", "id": "GO:0046598", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046598", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" }, { "name": "receptor-mediated virion attachment to host cell", "id": "GO:0046813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046813", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" }, { "name": "membrane fusion", "id": "GO:0061025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061025", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" }, { "name": "viral translation", "id": "GO:0019081", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019081", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" }, { "name": "fusion of virus membrane with host plasma membrane", "id": "GO:0019064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019064", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" }, { "name": "virion attachment to host cell", "id": "GO:0019062", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019062", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" }, { "name": "suppression by virus of host tetherin activity", "id": "GO:0039587", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0039587", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" }, { "name": "endocytosis involved in viral entry into host cell", "id": "GO:0075509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0075509", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" }, { "name": "fusion of virus membrane with host endosome membrane", "id": "GO:0039654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0039654", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" }, { "name": "entry receptor-mediated virion attachment to host cell", "id": "GO:0098670", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098670", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" }, { "name": "symbiont-mediated suppression of host innate immune response", "id": "GO:0052170", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0052170", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1074, "end_pos": 1076, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1098, "end_pos": 1100, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1134, "end_pos": 1136, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1158, "end_pos": 1160, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1173, "end_pos": 1175, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1194, "end_pos": 1196, "annotation": "n_glycosylation_sequon" }, { "start_pos": 122, "end_pos": 124, "annotation": "n_glycosylation_sequon" }, { "start_pos": 149, "end_pos": 151, "annotation": "n_glycosylation_sequon" }, { "start_pos": 165, "end_pos": 167, "annotation": "n_glycosylation_sequon" }, { "start_pos": 17, "end_pos": 19, "annotation": "n_glycosylation_sequon" }, { "start_pos": 234, "end_pos": 236, "annotation": "n_glycosylation_sequon" }, { "start_pos": 282, "end_pos": 284, "annotation": "n_glycosylation_sequon" }, { "start_pos": 331, "end_pos": 333, "annotation": "n_glycosylation_sequon" }, { "start_pos": 343, "end_pos": 345, "annotation": "n_glycosylation_sequon" }, { "start_pos": 603, "end_pos": 605, "annotation": "n_glycosylation_sequon" }, { "start_pos": 616, "end_pos": 618, "annotation": "n_glycosylation_sequon" }, { "start_pos": 61, "end_pos": 63, "annotation": "n_glycosylation_sequon" }, { "start_pos": 657, "end_pos": 659, "annotation": "n_glycosylation_sequon" }, { "start_pos": 709, "end_pos": 711, "annotation": "n_glycosylation_sequon" }, { "start_pos": 717, "end_pos": 719, "annotation": "n_glycosylation_sequon" }, { "start_pos": 74, "end_pos": 76, "annotation": "n_glycosylation_sequon" }, { "start_pos": 801, "end_pos": 803, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [ { "annotation": "Highly decorated by heterogeneous N-linked glycans protruding from the trimer surface (PubMed:32075877, PubMed:32155444, PubMed:32929138). Highly glycosylated by host both on S1 and S2 subunits, occluding many regions across the surface of the protein (PubMed:32363391, PubMed:32366695, PubMed:32929138). Approximately 40% of the protein surface is shielded from antibody recognition by glycans, with the notable exception of the ACE2 receptor binding domain (PubMed:32929138).", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "32929138", "url": "https://glygen.org/publication/PubMed/32929138" }, { "database": "PubMed", "id": "32155444", "url": "https://glygen.org/publication/PubMed/32155444" }, { "database": "PubMed", "id": "32366695", "url": "https://glygen.org/publication/PubMed/32366695" }, { "database": "PubMed", "id": "32075877", "url": "https://glygen.org/publication/PubMed/32075877" }, { "database": "PubMed", "id": "32363391", "url": "https://glygen.org/publication/PubMed/32363391" } ] }, { "annotation": "O-glycosylated by host GALNT1 at the end of S1. This could reduce the efficiency of S1/S2 cleavage.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "34732583", "url": "https://glygen.org/publication/PubMed/34732583" } ] }, { "annotation": "Specific enzymatic cleavages in vivo yield mature proteins. The precursor is processed into S1 and S2 by host furin or unknown proteases to yield the mature S1 and S2 proteins (PubMed:32155444, PubMed:32362314, PubMed:32703818, PubMed:34159616, PubMed:34561887). Processing between S2 and S2' occurs either by host CTSL in endosomes (PubMed:32221306, PubMed:33465165, PubMed:34159616), or by host TMPRSS2 at the cell surface (PubMed:32142651). Both cleavages are necessary for the protein to be fusion competent (PubMed:32703818, PubMed:34159616, PubMed:34561887). Cell surface activation allows the virus to enter the cell despite inhibition of the endosomal pathway by hydroxychloroquine (PubMed:33465165). The polybasic furin cleavage site is absent in SARS-CoV S (PubMed:32155444, PubMed:32362314, PubMed:33465165). It increases the dependence on TMPRSS2 expression by SARS-CoV-2 (PubMed:33465165). D614G substitution would enhance furin cleavage at the S1/S2 junction (PubMed:33417835).", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "32155444", "url": "https://glygen.org/publication/PubMed/32155444" }, { "database": "PubMed", "id": "32142651", "url": "https://glygen.org/publication/PubMed/32142651" }, { "database": "PubMed", "id": "32362314", "url": "https://glygen.org/publication/PubMed/32362314" }, { "database": "PubMed", "id": "33465165", "url": "https://glygen.org/publication/PubMed/33465165" }, { "database": "PubMed", "id": "34561887", "url": "https://glygen.org/publication/PubMed/34561887" }, { "database": "PubMed", "id": "32703818", "url": "https://glygen.org/publication/PubMed/32703818" }, { "database": "PubMed", "id": "33417835", "url": "https://glygen.org/publication/PubMed/33417835" }, { "database": "PubMed", "id": "34159616", "url": "https://glygen.org/publication/PubMed/34159616" }, { "database": "PubMed", "id": "32221306", "url": "https://glygen.org/publication/PubMed/32221306" } ] }, { "annotation": "The cytoplasmic Cys-rich domain is palmitoylated. Palmitoylated spike proteins drive the formation of localized ordered cholesterol and sphingo-lipid-rich lipid nanodomains in the early Golgi, where viral budding occurs.", "evidence": [ { "database": "UniProtKB", "id": "P0DTC2", "url": "https://www.uniprot.org/uniprot/P0DTC2" }, { "database": "PubMed", "id": "34599882", "url": "https://glygen.org/publication/PubMed/34599882" } ] } ], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.uniref", "label": "UniRef Homologs" } ], "sequence_features": { "n_linked_sites": [ 17, 61, 74, 122, 149, 165, 234, 282, 331, 343, 460, 487, 603, 616, 657, 679, 709, 717, 801, 1074, 1098, 1134, 1158, 1173, 1194 ], "o_linked_sites": [ 63, 71, 73, 76, 94, 95, 114, 124, 151, 167, 236, 315, 323, 325, 333, 345, 376, 415, 417, 478, 489, 494, 500, 505, 523, 618, 676, 678, 803, 1076, 1077, 1097, 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