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sapiens", "tax_common_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "start_pos": 481, "end_pos": 481, "residue": "Asn", "evidence": [ { "database": "PubMed", "id": "37074911", "url": "https://glygen.org/publication/PubMed/37074911" }, { "database": "PDC", "id": "PDC000471", "url": "https://proteomic.datacommons.cancer.gov/pdc/study/PDC000471" } ], "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human" }, { "uniprot_canonical_ac": "P21860-1", "start_pos": 250, "end_pos": 250, "residue": "Asn", "evidence": [ { "database": "PubMed", "id": "37074911", "url": "https://glygen.org/publication/PubMed/37074911" }, { "database": "PDC", "id": "PDC000471", "url": "https://proteomic.datacommons.cancer.gov/pdc/study/PDC000471" } ], "protein_name": "Receptor tyrosine-protein kinase erbB-3", "gene_name": "ERBB3", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human" }, { "uniprot_canonical_ac": 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"https://proteomic.datacommons.cancer.gov/pdc/study/PDC000471" } ], "protein_name": "Carboxypeptidase D", "gene_name": "CPD", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human" }, { "uniprot_canonical_ac": "O15118-1", "start_pos": 222, "end_pos": 222, "residue": "Asn", "evidence": [ { "database": "PubMed", "id": "37074911", "url": "https://glygen.org/publication/PubMed/37074911" }, { "database": "PDC", "id": "PDC000471", "url": "https://proteomic.datacommons.cancer.gov/pdc/study/PDC000471" } ], "protein_name": "NPC intracellular cholesterol transporter 1", "gene_name": "NPC1", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human" }, { "uniprot_canonical_ac": "Q8IWF2-1", "start_pos": 502, "end_pos": 502, "residue": "Asn", "evidence": [ { "database": "PubMed", "id": "37074911", "url": "https://glygen.org/publication/PubMed/37074911" }, { "database": "PDC", "id": "PDC000471", "url": "https://proteomic.datacommons.cancer.gov/pdc/study/PDC000471" } ], "protein_name": "FAD-dependent oxidoreductase domain-containing protein 2", "gene_name": "FOXRED2", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human" }, { "uniprot_canonical_ac": "Q9H8L6-1", "start_pos": 350, "end_pos": 350, "residue": "Asn", "evidence": [ { "database": "PubMed", "id": "37074911", "url": "https://glygen.org/publication/PubMed/37074911" }, { "database": "PDC", "id": "PDC000471", "url": "https://proteomic.datacommons.cancer.gov/pdc/study/PDC000471" } ], "protein_name": "Multimerin-2", "gene_name": "MMRN2", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4D7-1", "start_pos": 696, "end_pos": 696, "residue": "Asn", "evidence": [ { "database": "PubMed", "id": "37074911", "url": "https://glygen.org/publication/PubMed/37074911" }, { "database": "PDC", "id": "PDC000471", "url": "https://proteomic.datacommons.cancer.gov/pdc/study/PDC000471" } ], "protein_name": "Plexin-D1", "gene_name": "PLXND1", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human" }, { "uniprot_canonical_ac": "P01833-1", "start_pos": 469, "end_pos": 469, "residue": "Asn", "evidence": [ { "database": "PubMed", "id": "37074911", "url": "https://glygen.org/publication/PubMed/37074911" }, { "database": "PDC", "id": "PDC000471", "url": "https://proteomic.datacommons.cancer.gov/pdc/study/PDC000471" } ], "protein_name": "Polymeric immunoglobulin receptor", "gene_name": "PIGR", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human" } ], "publication": [ { "title": "Glycoproteomic analysis of the secretome of human endothelial cells.", "journal": "Molecular & cellular proteomics : MCP", "date": "2013", "authors": "Yin X, Bern M, Xing Q, Ho J, Viner R, Mayr M", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000040", "url": "http://data.glygen.org/GLY_000040" }, { "database": "GlyTouCan", "id": "G31852PQ", "url": "https://glytoucan.org/Structures/Glycans/G31852PQ" } ], "reference": [ { "type": "PubMed", "id": "23345538", "url": "https://glygen.org/publication/PubMed/23345538" } ] }, { "title": "N-Glycoproteomics of Human Seminal Plasma Glycoproteins.", "journal": "Journal of proteome research", "date": "2016", "authors": "Saraswat M, Joenvaara S, Tomar AK, Singh S, Yadav S, Renkonen R", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000040", "url": "http://data.glygen.org/GLY_000040" }, { "database": "GlyTouCan", "id": "G31852PQ", "url": "https://glytoucan.org/Structures/Glycans/G31852PQ" } ], "reference": [ { "type": "PubMed", "id": "26791533", "url": "https://glygen.org/publication/PubMed/26791533" } ] }, { "title": "Site-Specific Profiling of Serum Glycoproteins Using N-Linked Glycan and Glycosite Analysis Revealing Atypical N-Glycosylation Sites on Albumin and alpha-1B-Glycoprotein.", "journal": "Analytical chemistry", "date": "2018", "authors": "Sun S, Hu Y, Jia L, Eshghi ST, Liu Y, Shah P, Zhang H", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000040", "url": "http://data.glygen.org/GLY_000040" }, { "database": "GlyTouCan", "id": "G31852PQ", "url": "https://glytoucan.org/Structures/Glycans/G31852PQ" } ], "reference": [ { "type": "PubMed", "id": "29671580", "url": "https://glygen.org/publication/PubMed/29671580" } ] }, { "title": "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "journal": "Molecular & cellular proteomics : MCP", "date": "2012", "authors": "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000040", "url": "http://data.glygen.org/GLY_000040" }, { "database": "GlyTouCan", "id": "G31852PQ", "url": "https://glytoucan.org/Structures/Glycans/G31852PQ" } ], "reference": [ { "type": "PubMed", "id": "22171320", "url": "https://glygen.org/publication/PubMed/22171320" } ] }, { "title": "Comparison of sialylated N-glycopeptide levels in serum of pancreatic cancer patients, acute pancreatitis patients, and healthy controls.", "journal": "Proteomics", "date": "2014", "authors": "Kontro H, Joenvaara S, Haglund C, Renkonen R", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000040", "url": "http://data.glygen.org/GLY_000040" }, { "database": "GlyTouCan", "id": "G31852PQ", "url": "https://glytoucan.org/Structures/Glycans/G31852PQ" } ], "reference": [ { "type": "PubMed", "id": "24841998", "url": "https://glygen.org/publication/PubMed/24841998" } ] }, { "title": "Efficient and accurate glycopeptide identification pipeline for high-throughput site-specific N-glycosylation analysis.", "journal": "Journal of proteome research", "date": "2014", "authors": "Liu M, Zhang Y, Chen Y, Yan G, Shen C, Cao J, Zhou X, Liu X, Zhang L, Shen H, Lu H, He F, Yang P", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000040", "url": "http://data.glygen.org/GLY_000040" }, { "database": "GlyTouCan", "id": "G31852PQ", "url": "https://glytoucan.org/Structures/Glycans/G31852PQ" } ], "reference": [ { "type": "PubMed", "id": "24766575", "url": "https://glygen.org/publication/PubMed/24766575" } ] }, { "title": "Multi-isotype Glycoproteomic Characterization of Serum Antibody Heavy Chains Reveals Isotype- and Subclass-Specific N-Glycosylation Profiles.", "journal": "Molecular & cellular proteomics : MCP", "date": "2019", "authors": "Chandler KB, Mehta N, Leon DR, Suscovich TJ, Alter G, Costello CE", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000040", "url": "http://data.glygen.org/GLY_000040" }, { "database": "GlyTouCan", "id": "G31852PQ", "url": "https://glytoucan.org/Structures/Glycans/G31852PQ" } ], "reference": [ { "type": "PubMed", "id": "30659065", "url": "https://glygen.org/publication/PubMed/30659065" } ] }, { "title": "Virus-Receptor Interactions of Glycosylated SARS-CoV-2 Spike and Human ACE2 Receptor.", "journal": "Cell host & microbe", "date": "2020", "authors": "Zhao P, Praissman JL, Grant OC, Cai Y, Xiao T, Rosenbalm KE, Aoki K, Kellman BP, Bridger R, Barouch DH, Brindley MA, Lewis NE, Tiemeyer M, Chen B, Woods RJ, Wells L", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000040", "url": "http://data.glygen.org/GLY_000040" }, { "database": "GlyTouCan", "id": "G31852PQ", "url": "https://glytoucan.org/Structures/Glycans/G31852PQ" } ], "reference": [ { "type": "PubMed", "id": "32841605", "url": "https://glygen.org/publication/PubMed/32841605" } ] }, { "title": "Virus-Receptor Interactions of Glycosylated SARS-CoV-2 Spike and Human ACE2 Receptor", "journal": "Cell Host Microbe", "date": "2020", "authors": "Zhao P., Praissman J.L., Grant O.C., Cai Y., Xiao T., Rosenbalm K.E., Aoki K., Kellman B.P., Bridger R., Barouch D.H., Brindley M.A., Lewis N.E., Tiemeyer M., Chen B., Woods R.J., Wells L.", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000040", "url": "http://data.glygen.org/GLY_000040" } ], "reference": [ { "type": "DOI", "id": "10.1016/j.chom.2020.08.004", "url": "https://glygen.org/publication/DOI/10.1016/j.chom.2020.08.004" } ] }, { "title": "Tumor cells express pauci- and oligomannosidic N-glycans in glycoproteins recognized by the mannose receptor (CD206).", "journal": "Cellular and molecular life sciences : CMLS", "date": "2021", "authors": "Stavenhagen K, Laan LC, Gao C, Mehta AY, Heimburg-Molinaro J, Glickman JN, van Die I, Cummings RD", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000040", "url": "http://data.glygen.org/GLY_000040" }, { "database": "GlyTouCan", "id": "G31852PQ", "url": "https://glytoucan.org/Structures/Glycans/G31852PQ" } ], "reference": [ { "type": "PubMed", "id": "34089345", "url": "https://glygen.org/publication/PubMed/34089345" } ] }, { "title": "Tumor cells express pauci- and oligomannosidic N-glycans in glycoproteins recognized by the mannose receptor (CD206)", "journal": "Cell Mol Life Sci", "date": "2021", "authors": "Stavenhagen K., Laan L.C., Gao C., Mehta A.Y., Heimburg-Molinaro J., Glickman J.N., van Die I., Cummings R.D.", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000040", "url": "http://data.glygen.org/GLY_000040" } ], "reference": [ { "type": "DOI", "id": "10.1007/s00018-021-03863-1", "url": "https://glygen.org/publication/DOI/10.1007/s00018-021-03863-1" } ] }, { "title": "Site-Specific N-Glycosylation of Endothelial Cell Receptor Tyrosine Kinase VEGFR-2.", "journal": "Journal of proteome research", "date": "2017", "authors": "Chandler KB, Leon DR, Meyer RD, Rahimi N, Costello CE", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000041", "url": "http://data.glygen.org/GLY_000041" }, { "database": "GlyTouCan", "id": "G31852PQ", "url": "https://glytoucan.org/Structures/Glycans/G31852PQ" } ], "reference": [ { "type": "PubMed", "id": "27966990", "url": "https://glygen.org/publication/PubMed/27966990" } ] }, { "title": "N-Glycosylation in isolated rat nerve terminals.", "journal": "Molecular omics", "date": "2021", "authors": "Matthies I, Abrahams JL, Jensen P, Oliveira T, Kolarich D, Larsen MR", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" }, { "database": "GlyTouCan", "id": "G31852PQ", "url": "https://glytoucan.org/Structures/Glycans/G31852PQ" } ], "reference": [ { "type": "PubMed", "id": "34106099", "url": "https://glygen.org/publication/PubMed/34106099" } ] }, { "title": "N-Glycosylation in isolated rat nerve terminals", "journal": "Molecular Omics", "date": "2021", "authors": "Matthies I., Abrahams J.L., Jensen P., Oliveira T., Kolarich D., Larsen M.R.", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" } ], "reference": [ { "type": "DOI", "id": "10.1039/D0MO00044B", "url": "https://glygen.org/publication/DOI/10.1039/D0MO00044B" } ] }, { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "journal": "Journal of proteome research", "date": "2013", "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000221", "url": "http://data.glygen.org/GLY_000221" }, { "database": "GlyTouCan", "id": "G31852PQ", "url": "https://glytoucan.org/Structures/Glycans/G31852PQ" } ], "reference": [ { "type": "PubMed", "id": "24090084", "url": "https://glygen.org/publication/PubMed/24090084" } ] }, { "title": "Comprehensive Analysis of the Glycan Complement of SARS-CoV-2 Spike Proteins Using Signature Ions-Triggered Electron-Transfer/Higher-Energy Collisional Dissociation (EThcD) Mass Spectrometry.", "journal": "Analytical chemistry", "date": "2020", "authors": "Wang D, Baudys J, Bundy JL, Solano M, Keppel T, Barr JR", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000628", "url": "http://data.glygen.org/GLY_000628" }, { "database": "UniCarbKB", "id": "GLY_000479", "url": "http://data.glygen.org/GLY_000479" }, { "database": "GlyTouCan", "id": "G31852PQ", "url": "https://glytoucan.org/Structures/Glycans/G31852PQ" } ], "reference": [ { "type": "PubMed", "id": "33064451", "url": "https://glygen.org/publication/PubMed/33064451" } ] }, { "title": "Comprehensive Analysis of the Glycan Complement of SARS-CoV-2 Spike Proteins Using Signature Ions-Triggered Electron-Transfer/Higher-Energy Collisional Dissociation (EThcD) Mass Spectrometry", "journal": "Anal. Chem.", "date": "2020", "authors": "Wang D., Baudys J., Bundy J.L., Solano M., Keppel T., Barr J.R.", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000628", "url": "http://data.glygen.org/GLY_000628" }, { "database": "UniCarbKB", "id": "GLY_000479", "url": "http://data.glygen.org/GLY_000479" } ], "reference": [ { "type": "DOI", "id": "10.1021/acs.analchem.0c03301", "url": "https://glygen.org/publication/DOI/10.1021/acs.analchem.0c03301" } ] }, { "title": "Mapping the SARS-CoV-2 spike glycoprotein-derived peptidome presented by HLA class II on dendritic cells.", "journal": "Cell reports", "date": "2021", "authors": "Parker R, Partridge T, Wormald C, Kawahara R, Stalls V, Aggelakopoulou M, Parker J, Powell Doherty R, Ariosa Morejon Y, Lee E, Saunders K, Haynes BF, Acharya P, Thaysen-Andersen M, Borrow P, Ternette N", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000479", "url": "http://data.glygen.org/GLY_000479" }, { "database": "GlyTouCan", "id": "G31852PQ", "url": 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"authors": "Zhang Y, Zhao W, Mao Y, Chen Y, Wang S, Zhong Y, Su T, Gong M, Du D, Lu X, Cheng J, Yang H", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000479", "url": "http://data.glygen.org/GLY_000479" }, { "database": "GlyTouCan", "id": "G31852PQ", "url": "https://glytoucan.org/Structures/Glycans/G31852PQ" } ], "reference": [ { "type": "PubMed", "id": "33077685", "url": "https://glygen.org/publication/PubMed/33077685" } ] }, { "title": "Site-specific N-glycosylation Characterization of Recombinant SARS-CoV-2 Spike Proteins", "journal": "Mol Cell Proteomics", "date": "2021", "authors": "Zhang Y., Zhao W., Mao Y., Chen Y., Wang S., Zhong Y., Su T., Gong M., Du D., Lu X., Cheng J., Yang H.", "evidence": [ { "database": "UniCarbKB", "id": "GLY_000479", "url": "http://data.glygen.org/GLY_000479" } ], "reference": [ { "type": "DOI", "id": "10.1074/mcp.RA120.002295", "url": "https://glygen.org/publication/DOI/10.1074/mcp.RA120.002295" } ] }, { "title": "Site-specific glycan analysis 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