{ "glytoucan_ac": "G03754YM", "number_monosaccharides": 21, "number_monosaccharides_suffix": "", "mass": 4192.49, "mass_pme": 5187.6, "tool_support": { "gnome_glygen_oglycans": "no", "sandbox": "yes", "gnome_glygen": "yes", "gnome": "yes", "gnome_glycotree_oglycans": "no", "pdb": "yes", "gnome_glygen_nglycans": "yes", "gnome_glycotree_nglycans": "yes" }, "fully_determined": "yes", "missing_score": 0, "glycan_type": "Saccharide", "iupac": "\u03b1-D-Neup5Ac-(2\u21923)-\u03b2-D-Galp-(1\u21924)-\u03b2-D-GlcpNAc-(1\u21922)[\u03b1-D-Neup5Ac-(2\u21923)-\u03b2-D-Galp-(1\u21924)-\u03b2-D-GlcpNAc-(1\u21924)]-\u03b1-D-Manp-(1\u21923)[\u03b1-D-Neup5Ac-(2\u21923)-\u03b2-D-Galp-(1\u21924)-\u03b2-D-GlcpNAc-(1\u21922)[\u03b1-D-Neup5Ac-(2\u21923)-\u03b2-D-Galp-(1\u21924)-\u03b2-D-GlcpNAc-(1\u21923)-\u03b2-D-Galp-(1\u21924)[\u03b1-L-Fucp-(1\u21923)]-\u03b2-D-GlcpNAc-(1\u21926)]-\u03b1-D-Manp-(1\u21926)]-\u03b2-D-Manp-(1\u21924)-\u03b2-D-GlcpNAc-(1\u21924)[\u03b1-L-Fucp-(1\u21926)]-\u03b2-D-GlcpNAc-(1\u2192", "wurcs": "WURCS=2.0/6,21,20/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-1-4-5-3-1-4-5-1-6-4-1-4-5-6/a4-b1_a6-u1_b4-c1_c3-d1_c6-k1_d2-e1_d4-h1_e4-f1_f3-g2_h4-i1_i3-j2_k2-l1_k6-o1_l4-m1_m3-n2_o3-p1_o4-q1_q3-r1_r4-s1_s3-t2", "glycoct": "RES 1b:b-dglc-HEX-1:5 2s:n-acetyl 3b:b-dglc-HEX-1:5 4s:n-acetyl 5b:b-dman-HEX-1:5 6b:a-dman-HEX-1:5 7b:b-dglc-HEX-1:5 8s:n-acetyl 9b:b-dgal-HEX-1:5 10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d 11s:n-acetyl 12b:b-dglc-HEX-1:5 13s:n-acetyl 14b:b-dgal-HEX-1:5 15b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d 16s:n-acetyl 17b:a-dman-HEX-1:5 18b:b-dglc-HEX-1:5 19s:n-acetyl 20b:b-dgal-HEX-1:5 21b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d 22s:n-acetyl 23b:b-dglc-HEX-1:5 24s:n-acetyl 25b:a-lgal-HEX-1:5|6:d 26b:b-dgal-HEX-1:5 27b:b-dglc-HEX-1:5 28s:n-acetyl 29b:b-dgal-HEX-1:5 30b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d 31s:n-acetyl 32b:a-lgal-HEX-1:5|6:d LIN 1:1d(2+1)2n 2:1o(4+1)3d 3:3d(2+1)4n 4:3o(4+1)5d 5:5o(3+1)6d 6:6o(2+1)7d 7:7d(2+1)8n 8:7o(4+1)9d 9:9o(3+2)10d 10:10d(5+1)11n 11:6o(4+1)12d 12:12d(2+1)13n 13:12o(4+1)14d 14:14o(3+2)15d 15:15d(5+1)16n 16:5o(6+1)17d 17:17o(2+1)18d 18:18d(2+1)19n 19:18o(4+1)20d 20:20o(3+2)21d 21:21d(5+1)22n 22:17o(6+1)23d 23:23d(2+1)24n 24:23o(3+1)25d 25:23o(4+1)26d 26:26o(3+1)27d 27:27d(2+1)28n 28:27o(4+1)29d 29:29o(3+2)30d 30:30d(5+1)31n 31:1o(6+1)32d", "inchi": "InChI=1S/C160H261N11O116/c1-37-84(207)103(226)106(229)143(250-37)248-36-72-121(97(220)77(136(238)252-72)165-43(7)192)268-139-79(167-45(9)194)99(222)115(63(27-181)260-139)269-146-110(233)129(277-152-135(279-142-82(170-48(12)197)102(225)119(67(31-185)263-142)273-150-114(237)133(95(218)62(26-180)257-150)287-160(156(245)246)17-53(202)76(164-42(6)191)126(283-160)89(212)57(206)21-175)108(231)120(68(32-186)264-152)267-138-78(166-44(8)193)98(221)116(64(28-182)259-138)270-147-111(234)130(92(215)59(23-177)254-147)284-157(153(239)240)14-50(199)73(161-39(3)188)123(280-157)86(209)54(203)18-172)96(219)71(265-146)35-249-151-134(278-141-81(169-47(11)196)101(224)118(66(30-184)262-141)272-149-113(236)132(94(217)61(25-179)256-149)286-159(155(243)244)16-52(201)75(163-41(5)190)125(282-159)88(211)56(205)20-174)105(228)90(213)70(266-151)34-247-137-83(171-49(13)198)127(275-144-107(230)104(227)85(208)38(2)251-144)122(69(33-187)258-137)274-145-109(232)128(91(214)58(22-176)253-145)276-140-80(168-46(10)195)100(223)117(65(29-183)261-140)271-148-112(235)131(93(216)60(24-178)255-148)285-158(154(241)242)15-51(200)74(162-40(4)189)124(281-158)87(210)55(204)19-173/h37-38,50-152,172-187,199-238H,14-36H2,1-13H3,(H,161,188)(H,162,189)(H,163,190)(H,164,191)(H,165,192)(H,166,193)(H,167,194)(H,168,195)(H,169,196)(H,170,197)(H,171,198)(H,239,240)(H,241,242)(H,243,244)(H,245,246)/t37-,38-,50-,51-,52-,53-,54+,55+,56+,57+,58+,59+,60+,61+,62+,63+,64+,65+,66+,67+,68+,69+,70+,71+,72+,73+,74+,75+,76+,77+,78+,79+,80+,81+,82+,83+,84+,85+,86+,87+,88+,89+,90+,91-,92-,93-,94-,95-,96+,97+,98+,99+,100+,101+,102+,103+,104+,105-,106-,107-,108-,109+,110-,111+,112+,113+,114+,115+,116+,117+,118+,119+,120+,121+,122+,123+,124+,125+,126+,127+,128-,129-,130-,131-,132-,133-,134-,135-,136+,137+,138-,139-,140-,141-,142-,143+,144-,145-,146-,147-,148-,149-,150-,151-,152+,157-,158-,159-,160-/m0/s1", "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4]DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH", "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O[C@H]8[C@@H]([C@H]([C@@H]([C@H](O8)CO)O[C@H]9[C@@H]([C@H]([C@H]([C@H](O9)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O[C@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)C)O)O)O)NC(=O)C)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "inchi_key": { "key": "MFPZAQDVZPWURV-PRHVPJJHSA-N", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/MFPZAQDVZPWURV-PRHVPJJHSA-N" }, "byonic": "HexNAc(7)Hex(8)dHex(2)NeuAc(4) % 4192.48624522", "gwb": "freeEnd--1b1D-GlcNAc,p(--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p)--4b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p)--6b1D-GlcNAc,p(--3a1L-Fuc,p)--4b1D-Gal,p--3b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd", "species": [ { "taxid": 9606, "name": "Homo sapiens", "annotation_category": "direct", "evidence": [ { "database": "GlyConnect", "id": "2608", "url": "https://glyconnect.expasy.org/browser/structures/2608" }, { "database": "GlyCosmos", "id": "G03754YM", "url": "https://glycosmos.org/glycans/show/G03754YM" }, { "database": "PubMed", "id": "10988252", "url": "https://glygen.org/publication/PubMed/10988252" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "classification": [ { "type": { "name": "N-linked", "url": "" }, "subtype": { "name": "Arm-fucosylated" } }, { "type": { "name": "N-linked", "url": "" }, "subtype": { "name": "Complex", "url": "" } }, { "type": { "name": "N-linked", "url": "" }, "subtype": { "name": "Core-fucosylated" } }, { "type": { "name": "N-linked", "url": "" }, "subtype": { "name": "Tetraantennary" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q921Q3-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase", "gene": "Alg1", "gene_link": "https://www.uniprot.org/uniprot/Q921Q3", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q9BT22-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase", "gene": "ALG1", "gene_link": "https://www.uniprot.org/uniprot/Q9BT22", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "P42867-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase", "gene": "Dpagt1", "gene_link": "https://www.uniprot.org/uniprot/P42867", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q9H3H5-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase", "gene": "DPAGT1", "gene_link": "https://www.uniprot.org/uniprot/Q9H3H5", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q8BML3-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG13", "gene": "Glt28d2", "gene_link": "https://www.uniprot.org/uniprot/Q8BML3", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q96F25-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14", "gene": "ALG14", "gene_link": "https://www.uniprot.org/uniprot/Q96F25", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q9D081-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14", "gene": "Alg14", "gene_link": "https://www.uniprot.org/uniprot/Q9D081", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q9D8C3-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG13", "gene": "Alg13", "gene_link": "https://www.uniprot.org/uniprot/Q9D8C3", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q9NP73-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG13", "gene": "ALG13", "gene_link": "https://www.uniprot.org/uniprot/Q9NP73", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q9DBE8-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2", "gene": "Alg2", "gene_link": "https://www.uniprot.org/uniprot/Q9DBE8", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q9H553-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2", "gene": "ALG2", "gene_link": "https://www.uniprot.org/uniprot/Q9H553", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "P26572-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase", "gene": "MGAT1", "gene_link": "https://www.uniprot.org/uniprot/P26572", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "P27808-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase", "gene": "Mgat1", "gene_link": "https://www.uniprot.org/uniprot/P27808", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "O60512-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Beta-1,4-galactosyltransferase 3", "gene": "B4GALT3", "gene_link": "https://www.uniprot.org/uniprot/O60512", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "O60909-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Beta-1,4-galactosyltransferase 2", "gene": "B4GALT2", "gene_link": "https://www.uniprot.org/uniprot/O60909", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "P15291-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Beta-1,4-galactosyltransferase 1", "gene": "B4GALT1", "gene_link": "https://www.uniprot.org/uniprot/P15291", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "P15535-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Beta-1,4-galactosyltransferase 1", "gene": "B4galt1", "gene_link": "https://www.uniprot.org/uniprot/P15535", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q91YY2-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Beta-1,4-galactosyltransferase 3", "gene": "B4galt3", "gene_link": "https://www.uniprot.org/uniprot/Q91YY2", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Beta-1,4-galactosyltransferase 2", "gene": "B4galt2", "gene_link": "https://www.uniprot.org/uniprot/Q9Z2Y2", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q10469-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase", "gene": "MGAT2", "gene_link": "https://www.uniprot.org/uniprot/Q10469", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q921V5-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase", "gene": "Mgat2", "gene_link": "https://www.uniprot.org/uniprot/Q921V5", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q812F8-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B", "gene": "Mgat4b", "gene_link": "https://www.uniprot.org/uniprot/Q812F8", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q812G0-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A", "gene": "Mgat4a", "gene_link": "https://www.uniprot.org/uniprot/Q812G0", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q9D306-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C", "gene": "Mgat4c", "gene_link": "https://www.uniprot.org/uniprot/Q9D306", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q9UBM8-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C", "gene": "MGAT4C", "gene_link": "https://www.uniprot.org/uniprot/Q9UBM8", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q9UM21-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A", "gene": "MGAT4A", "gene_link": "https://www.uniprot.org/uniprot/Q9UM21", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q9UQ53-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B", "gene": "MGAT4B", "gene_link": "https://www.uniprot.org/uniprot/Q9UQ53", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q09328-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A", "gene": "MGAT5", "gene_link": "https://www.uniprot.org/uniprot/Q09328", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q3V5L5-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B", "gene": "MGAT5B", "gene_link": "https://www.uniprot.org/uniprot/Q3V5L5", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q765H6-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B", "gene": "Mgat5b", "gene_link": "https://www.uniprot.org/uniprot/Q765H6", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q8R4G6-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A", "gene": "Mgat5", "gene_link": "https://www.uniprot.org/uniprot/Q8R4G6", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q9BYC5-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Alpha-(1,6)-fucosyltransferase", "gene": "FUT8", "gene_link": "https://www.uniprot.org/uniprot/Q9BYC5", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q9WTS2-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Alpha-(1,6)-fucosyltransferase", "gene": "Fut8", "gene_link": "https://www.uniprot.org/uniprot/Q9WTS2", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "P97325-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase", "gene": "St3gal3", "gene_link": "https://www.uniprot.org/uniprot/P97325", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q11203-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase", "gene": "ST3GAL3", "gene_link": "https://www.uniprot.org/uniprot/Q11203", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q11206-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4", "gene": "ST3GAL4", "gene_link": "https://www.uniprot.org/uniprot/Q11206", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q8VIB3-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase", "gene": "St3gal6", "gene_link": "https://www.uniprot.org/uniprot/Q8VIB3", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q91Y74-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4", "gene": "St3gal4", "gene_link": "https://www.uniprot.org/uniprot/Q91Y74", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q9Y274-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase", "gene": "ST3GAL6", "gene_link": "https://www.uniprot.org/uniprot/Q9Y274", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q1RLK6-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4", "gene": "B3gnt4", "gene_link": "https://www.uniprot.org/uniprot/Q1RLK6", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q7Z7M8-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8", "gene": "B3GNT8", "gene_link": "https://www.uniprot.org/uniprot/Q7Z7M8", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q8R3I9-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8", "gene": "B3gnt8", "gene_link": "https://www.uniprot.org/uniprot/Q8R3I9", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q9C0J1-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4", "gene": "B3GNT4", "gene_link": "https://www.uniprot.org/uniprot/Q9C0J1", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q9NY97-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2", "gene": "B3GNT2", "gene_link": "https://www.uniprot.org/uniprot/Q9NY97", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q9Z222-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2", "gene": "B3GNT2", "gene_link": "https://www.uniprot.org/uniprot/Q9Z222", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "O88819-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9", "gene": "Fut9", "gene_link": "https://www.uniprot.org/uniprot/O88819", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "P21217-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase FUT3", "gene": "FUT3", "gene_link": "https://www.uniprot.org/uniprot/P21217", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "P22083-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Alpha-(1,3)-fucosyltransferase 4", "gene": "FUT4", "gene_link": "https://www.uniprot.org/uniprot/P22083", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "P51993-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase FUT6", "gene": "FUT6", "gene_link": "https://www.uniprot.org/uniprot/P51993", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q11127-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "Alpha-(1,3)-fucosyltransferase 4", "gene": "Fut4", "gene_link": "https://www.uniprot.org/uniprot/Q11127", "tax_id": 10090, "tax_name": "Mus musculus", "tax_common_name": "Mouse", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q11128-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase FUT5", "gene": "FUT5", "gene_link": "https://www.uniprot.org/uniprot/Q11128", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] }, { "uniprot_canonical_ac": "Q9Y231-1", "xref_key": "glycan_xref_sandbox", "xref_id": "G03754YM", "protein_name": "4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9", "gene": "FUT9", "gene_link": "https://www.uniprot.org/uniprot/Q9Y231", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human", "evidence": [ { "id": "G03754YM", "database": "SandBox", "url": "https://sandbox.glyomics.org/explore.html?G03754YM" } ] } ], "crossref": [ { "id": "146017606", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/146017606", "database": "PubChem Compound", "categories": [ "Chemical" ] }, { "id": "405040340", "url": "https://pubchem.ncbi.nlm.nih.gov/substance/405040340", "database": "PubChem Substance", "categories": [ "Chemical" ] }, { "id": "2608", "url": "https://glyconnect.expasy.org/browser/structures/2608", "database": "GlyConnect", "categories": [ "Glycoproteomics", "Glycomics" ] }, { "id": "157534", "url": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=157534", "database": "ChEBI", "categories": [] }, { "id": "G03754YM", "url": "https://glytoucan.org/Structures/Glycans/G03754YM", "database": "GlyTouCan", "categories": [ "Glycomics" ] }, { "id": "G03754YM", "url": "https://sandbox.glyomics.org/explore.html?G03754YM", "database": "SandBox", "categories": [ "Enzyme and Pathway" ] }, { "id": "G03754YM", "url": "https://gnome.glyomics.org/restrictions/GlyGen.StructureBrowser.html?focus=G03754YM", "database": "GNOme", "categories": [ "Ontology and Dictionary", "Glycomics" ] }, { "id": "G03754YM", "url": "https://glycosmos.org/glycans/show/G03754YM", "database": "GlyCosmos", "categories": [ "Glycoproteomics", "Glycomics" ] } ], "glycoprotein": [ { "uniprot_canonical_ac": "P00533-1", "evidence": [ { "database": "PubMed", "id": "10988252", "url": "https://glygen.org/publication/PubMed/10988252" }, { "database": "GlyConnect", "id": "137", "url": "https://glyconnect.expasy.org/browser/proteins/137" } ], "protein_name": "Epidermal growth factor receptor", "gene_name": "EGFR", "tax_id": 9606, "tax_name": "Homo sapiens", "tax_common_name": "Human" } ], "publication": [ { "title": "Characterization of the carbohydrate chains of the secreted form of the human epidermal growth factor receptor.", "journal": "Glycobiology", "date": "2000", "authors": "Stroop CJ, Weber W, Gerwig GJ, Nimtz M, Kamerling JP, Vliegenthart JF", "evidence": [ { "database": "GlyTouCan", "id": "G03754YM", "url": "https://glytoucan.org/Structures/Glycans/G03754YM" }, { "database": "GlyConnect", "id": "137", "url": "https://glyconnect.expasy.org/browser/proteins/137" } ], "reference": [ { "type": "PubMed", "id": "10988252", "url": "https://glygen.org/publication/PubMed/10988252" } ] } ], "residues": [ { "id": "NC", "name": "N-glycan_core_b-D-Manp_C", "attachedby": "rxn.Q921Q3-1", "detachedby": "", "parentid": "NB" }, { "id": "NC", "name": "N-glycan_core_b-D-Manp_C", "attachedby": "rxn.Q9BT22-1", "detachedby": "", "parentid": "NB" }, { "id": "NA", "name": "N-glycan_core_D-GlcNAc_A", "attachedby": "rxn.P42867-1", "detachedby": "", "parentid": "0" }, { "id": "NA", "name": "N-glycan_core_D-GlcNAc_A", "attachedby": "rxn.Q9H3H5-1", "detachedby": "", "parentid": "0" }, { "id": "NB", "name": "N-glycan_core_b-D-GlcpNAc_B", "attachedby": "rxn.Q8BML3-1", "detachedby": "", "parentid": "NA" }, { "id": "NB", "name": "N-glycan_core_b-D-GlcpNAc_B", "attachedby": "rxn.Q96F25-1", "detachedby": "", "parentid": "NA" }, { "id": "NB", "name": "N-glycan_core_b-D-GlcpNAc_B", "attachedby": "rxn.Q9D081-1", "detachedby": "", "parentid": "NA" }, { "id": "NB", "name": "N-glycan_core_b-D-GlcpNAc_B", "attachedby": "rxn.Q9D8C3-1", "detachedby": "", "parentid": "NA" }, { "id": "NB", "name": "N-glycan_core_b-D-GlcpNAc_B", "attachedby": "rxn.Q9NP73-1", "detachedby": "", "parentid": "NA" }, { "id": "N1", "name": "N-glycan_a-D-Manp_1", "attachedby": "rxn.Q9DBE8-1", "detachedby": "", "parentid": "NC" }, { "id": "N1", "name": "N-glycan_a-D-Manp_1", "attachedby": "rxn.Q9H553-1", "detachedby": "", "parentid": "NC" }, { "id": "N2", "name": "N-glycan_b-D-GlcpNAc_2", "attachedby": "rxn.P26572-1", "detachedby": "", "parentid": "N1" }, { "id": "N2", "name": "N-glycan_b-D-GlcpNAc_2", "attachedby": "rxn.P27808-1", "detachedby": "", "parentid": "N1" }, { "id": "N3", "name": "N-glycan_b-D-Galp_3", "attachedby": "rxn.O60512-1", "detachedby": "", "parentid": "N2" }, { "id": "N3", "name": "N-glycan_b-D-Galp_3", "attachedby": "rxn.O60909-1", "detachedby": "", "parentid": "N2" }, { "id": "N3", "name": "N-glycan_b-D-Galp_3", "attachedby": "rxn.P15291-1", "detachedby": "", "parentid": "N2" }, { "id": "N3", "name": "N-glycan_b-D-Galp_3", "attachedby": "rxn.P15535-1", "detachedby": "", "parentid": "N2" }, { "id": "N3", "name": "N-glycan_b-D-Galp_3", "attachedby": "rxn.Q91YY2-1", "detachedby": "", "parentid": "N2" }, { "id": "N3", "name": "N-glycan_b-D-Galp_3", "attachedby": "rxn.Q9Z2Y2-1", "detachedby": "", "parentid": "N2" }, { "id": "N4", "name": "N-glycan_a-D-Manp_4", "attachedby": "rxn.Q9DBE8-1", "detachedby": "", "parentid": "NC" }, { "id": "N4", "name": "N-glycan_a-D-Manp_4", "attachedby": "rxn.Q9H553-1", "detachedby": "", "parentid": "NC" }, { "id": "N5", "name": "N-glycan_b-D-GlcpNAc_5", "attachedby": "rxn.Q10469-1", "detachedby": "", "parentid": "N4" }, { "id": "N5", "name": "N-glycan_b-D-GlcpNAc_5", "attachedby": "rxn.Q921V5-1", "detachedby": "", "parentid": "N4" }, { "id": "N6", "name": "N-glycan_b-D-Galp_6", "attachedby": "rxn.O60512-1", "detachedby": "", "parentid": "N5" }, { "id": "N6", "name": "N-glycan_b-D-Galp_6", "attachedby": "rxn.O60909-1", "detachedby": "", "parentid": "N5" }, { "id": "N6", "name": "N-glycan_b-D-Galp_6", "attachedby": "rxn.P15291-1", "detachedby": "", "parentid": "N5" }, { "id": "N6", "name": "N-glycan_b-D-Galp_6", "attachedby": "rxn.P15535-1", "detachedby": "", "parentid": "N5" }, { "id": "N6", "name": "N-glycan_b-D-Galp_6", "attachedby": "rxn.Q91YY2-1", "detachedby": "", "parentid": "N5" }, { "id": "N6", "name": "N-glycan_b-D-Galp_6", "attachedby": "rxn.Q9Z2Y2-1", "detachedby": "", "parentid": "N5" }, { "id": "N7", "name": "N-glycan_b-D-GlcpNAc_7", "attachedby": "rxn.Q812F8-1", "detachedby": "", "parentid": "N1" }, { "id": "N7", "name": "N-glycan_b-D-GlcpNAc_7", "attachedby": "rxn.Q812G0-1", "detachedby": "", "parentid": "N1" }, { "id": "N7", "name": "N-glycan_b-D-GlcpNAc_7", "attachedby": "rxn.Q9D306-1", "detachedby": "", "parentid": "N1" }, { "id": "N7", "name": "N-glycan_b-D-GlcpNAc_7", "attachedby": "rxn.Q9UBM8-1", "detachedby": "", "parentid": "N1" }, { "id": "N7", "name": "N-glycan_b-D-GlcpNAc_7", "attachedby": "rxn.Q9UM21-1", "detachedby": "", "parentid": "N1" }, { "id": "N7", "name": "N-glycan_b-D-GlcpNAc_7", "attachedby": "rxn.Q9UQ53-1", "detachedby": "", "parentid": "N1" }, { "id": "N8", "name": "N-glycan_b-D-Galp_8", "attachedby": "rxn.O60512-1", "detachedby": "", "parentid": "N7" }, { "id": "N8", "name": "N-glycan_b-D-Galp_8", "attachedby": "rxn.O60909-1", "detachedby": "", "parentid": "N7" }, { "id": "N8", "name": "N-glycan_b-D-Galp_8", "attachedby": "rxn.P15291-1", "detachedby": "", "parentid": "N7" }, { "id": "N8", "name": "N-glycan_b-D-Galp_8", "attachedby": "rxn.P15535-1", "detachedby": "", "parentid": "N7" }, { "id": "N8", "name": "N-glycan_b-D-Galp_8", "attachedby": "rxn.Q91YY2-1", "detachedby": "", "parentid": "N7" }, { "id": "N8", "name": "N-glycan_b-D-Galp_8", "attachedby": "rxn.Q9Z2Y2-1", "detachedby": "", "parentid": "N7" }, { "id": "N9", "name": "N-glycan_b-D-GlcpNAc_9", "attachedby": "rxn.Q09328-1", "detachedby": "", "parentid": "N4" }, { "id": "N9", "name": "N-glycan_b-D-GlcpNAc_9", "attachedby": "rxn.Q3V5L5-1", "detachedby": "", "parentid": "N4" }, { "id": "N9", "name": "N-glycan_b-D-GlcpNAc_9", "attachedby": "rxn.Q765H6-1", "detachedby": "", "parentid": "N4" }, { "id": "N9", "name": "N-glycan_b-D-GlcpNAc_9", "attachedby": "rxn.Q8R4G6-1", "detachedby": "", "parentid": "N4" }, { "id": "N10", "name": "N-glycan_b-D-Galp_10", "attachedby": "rxn.O60512-1", "detachedby": "", "parentid": "N9" }, { "id": "N10", "name": "N-glycan_b-D-Galp_10", "attachedby": "rxn.O60909-1", "detachedby": "", "parentid": "N9" }, { "id": "N10", "name": "N-glycan_b-D-Galp_10", "attachedby": "rxn.P15291-1", "detachedby": "", "parentid": "N9" }, { "id": "N10", "name": "N-glycan_b-D-Galp_10", "attachedby": "rxn.P15535-1", "detachedby": "", "parentid": "N9" }, { "id": "N10", "name": "N-glycan_b-D-Galp_10", "attachedby": "rxn.Q91YY2-1", "detachedby": "", "parentid": "N9" }, { "id": "N10", "name": "N-glycan_b-D-Galp_10", "attachedby": "rxn.Q9Z2Y2-1", "detachedby": "", "parentid": "N9" }, { "id": "N15", "name": "N-glycan_a-L-Fucp_15", "attachedby": "rxn.Q9BYC5-1", "detachedby": "", "parentid": "NA" }, { "id": "N15", "name": "N-glycan_a-L-Fucp_15", "attachedby": "rxn.Q9WTS2-1", "detachedby": "", "parentid": "NA" }, { "id": "N16", "name": "N-glycan_a-D-NeupNAc_16", "attachedby": "rxn.P97325-1", "detachedby": "", "parentid": "N6" }, { "id": "N16", "name": "N-glycan_a-D-NeupNAc_16", "attachedby": "rxn.Q11203-1", "detachedby": "", "parentid": "N6" }, { "id": "N16", "name": "N-glycan_a-D-NeupNAc_16", "attachedby": "rxn.Q11206-1", "detachedby": "", "parentid": "N6" }, { "id": "N16", "name": "N-glycan_a-D-NeupNAc_16", "attachedby": "rxn.Q8VIB3-1", "detachedby": "", "parentid": "N6" }, { "id": "N16", "name": "N-glycan_a-D-NeupNAc_16", "attachedby": "rxn.Q91Y74-1", "detachedby": "", "parentid": "N6" }, { "id": "N16", "name": "N-glycan_a-D-NeupNAc_16", "attachedby": "rxn.Q9Y274-1", "detachedby": "", "parentid": "N6" }, { "id": "N17", "name": "N-glycan_a-D-NeupNAc_17", "attachedby": "rxn.P97325-1", "detachedby": "", "parentid": "N3" }, { "id": "N17", "name": "N-glycan_a-D-NeupNAc_17", "attachedby": "rxn.Q11203-1", "detachedby": "", "parentid": "N3" }, { "id": "N17", "name": "N-glycan_a-D-NeupNAc_17", "attachedby": "rxn.Q11206-1", "detachedby": "", "parentid": "N3" }, { "id": "N17", "name": "N-glycan_a-D-NeupNAc_17", "attachedby": "rxn.Q8VIB3-1", "detachedby": "", "parentid": "N3" }, { "id": "N17", "name": "N-glycan_a-D-NeupNAc_17", "attachedby": "rxn.Q91Y74-1", "detachedby": "", "parentid": "N3" }, { "id": "N17", "name": "N-glycan_a-D-NeupNAc_17", "attachedby": "rxn.Q9Y274-1", "detachedby": "", "parentid": "N3" }, { "id": "N34", "name": "N-glycan_a-D-NeupNAc_34", "attachedby": "rxn.P97325-1", "detachedby": "", "parentid": "N8" }, { "id": "N34", "name": "N-glycan_a-D-NeupNAc_34", "attachedby": "rxn.Q11203-1", "detachedby": "", "parentid": "N8" }, { "id": "N34", "name": "N-glycan_a-D-NeupNAc_34", "attachedby": "rxn.Q11206-1", "detachedby": "", "parentid": "N8" }, { "id": "N34", "name": "N-glycan_a-D-NeupNAc_34", "attachedby": "rxn.Q8VIB3-1", "detachedby": "", "parentid": "N8" }, { "id": "N34", "name": "N-glycan_a-D-NeupNAc_34", "attachedby": "rxn.Q91Y74-1", "detachedby": "", "parentid": "N8" }, { "id": "N34", "name": "N-glycan_a-D-NeupNAc_34", "attachedby": "rxn.Q9Y274-1", "detachedby": "", "parentid": "N8" }, { "id": "N36", "name": "N-glycan_b-D-GlcpNAc_36", "attachedby": "rxn.Q1RLK6-1", "detachedby": "", "parentid": "N10" }, { "id": "N36", "name": "N-glycan_b-D-GlcpNAc_36", "attachedby": "rxn.Q7Z7M8-1", "detachedby": "", "parentid": "N10" }, { "id": "N36", "name": "N-glycan_b-D-GlcpNAc_36", "attachedby": "rxn.Q8R3I9-1", "detachedby": "", "parentid": "N10" }, { "id": "N36", "name": "N-glycan_b-D-GlcpNAc_36", "attachedby": "rxn.Q9C0J1-1", "detachedby": "", "parentid": "N10" }, { "id": "N36", "name": "N-glycan_b-D-GlcpNAc_36", "attachedby": "rxn.Q9NY97-1", "detachedby": "", "parentid": "N10" }, { "id": "N36", "name": "N-glycan_b-D-GlcpNAc_36", "attachedby": "rxn.Q9Z222-1", "detachedby": "", "parentid": "N10" }, { "id": "N37", "name": "N-glycan_b-D-Galp_37", "attachedby": "rxn.O60512-1", "detachedby": "", "parentid": "N36" }, { "id": "N37", "name": "N-glycan_b-D-Galp_37", "attachedby": "rxn.O60909-1", "detachedby": "", "parentid": "N36" }, { "id": "N37", "name": "N-glycan_b-D-Galp_37", "attachedby": "rxn.P15291-1", "detachedby": "", "parentid": "N36" }, { "id": "N37", "name": "N-glycan_b-D-Galp_37", "attachedby": "rxn.P15535-1", "detachedby": "", "parentid": "N36" }, { "id": "N37", "name": "N-glycan_b-D-Galp_37", "attachedby": "rxn.Q91YY2-1", "detachedby": "", "parentid": "N36" }, { "id": "N37", "name": "N-glycan_b-D-Galp_37", "attachedby": "rxn.Q9Z2Y2-1", "detachedby": "", "parentid": "N36" }, { "id": "N43", "name": "N-glycan_a-L-Fucp_43", "attachedby": "rxn.O88819-1", "detachedby": "", "parentid": "N9" }, { "id": "N43", "name": "N-glycan_a-L-Fucp_43", "attachedby": "rxn.P21217-1", "detachedby": "", "parentid": "N9" }, { "id": "N43", "name": "N-glycan_a-L-Fucp_43", "attachedby": "rxn.P22083-1", "detachedby": "", "parentid": "N9" }, { "id": "N43", "name": "N-glycan_a-L-Fucp_43", "attachedby": "rxn.P51993-1", "detachedby": "", "parentid": "N9" }, { "id": "N43", "name": "N-glycan_a-L-Fucp_43", "attachedby": "rxn.Q11127-1", "detachedby": "", "parentid": "N9" }, { "id": "N43", "name": "N-glycan_a-L-Fucp_43", "attachedby": "rxn.Q11128-1", "detachedby": "", "parentid": "N9" }, { "id": "N43", "name": "N-glycan_a-L-Fucp_43", "attachedby": "rxn.Q9Y231-1", "detachedby": "", "parentid": "N9" }, { "id": "N58", "name": "N-glycan_a-D-NeupNAc_58", "attachedby": "rxn.P97325-1", "detachedby": "", "parentid": "N37" }, { "id": "N58", "name": "N-glycan_a-D-NeupNAc_58", "attachedby": "rxn.Q11203-1", "detachedby": "", "parentid": "N37" }, { "id": "N58", "name": "N-glycan_a-D-NeupNAc_58", "attachedby": "rxn.Q11206-1", "detachedby": "", "parentid": "N37" }, { "id": "N58", "name": "N-glycan_a-D-NeupNAc_58", "attachedby": "rxn.Q8VIB3-1", "detachedby": "", "parentid": "N37" }, { "id": "N58", "name": "N-glycan_a-D-NeupNAc_58", "attachedby": "rxn.Q91Y74-1", "detachedby": "", "parentid": "N37" }, { "id": "N58", "name": "N-glycan_a-D-NeupNAc_58", "attachedby": "rxn.Q9Y274-1", "detachedby": "", "parentid": "N37" } ], "composition": [ { "name": "6-Deoxy-Hexose", "residue": "dhex", "count": 2, "cid": "840", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/840" }, { "name": "Hexose", "residue": "hex", "count": 8, "cid": "206", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/206" }, { "name": "N-Acetylhexosamine", "residue": "hexnac", "count": 7, "cid": "899", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/899" }, { "name": "Hexuronic Acid", "residue": "hexa", "count": 0, "cid": "610", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/610" }, { "name": "2-Amino-2-Deoxy-Hexose", "residue": "hexn", "count": 0, "cid": "739", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/739" }, { "name": "N-Acetyl-Neuraminic Acid", "residue": "neuac", "count": 4, "cid": "439197", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/439197" }, { "name": "N-Glycolyl-Neuraminic Acid", "residue": "neugc", "count": 0, "cid": "440001", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/440001" }, { "name": "Phosphate", "residue": "p", "count": 0, "cid": "1061", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/1061" }, { "name": "Pentose", "residue": "pent", "count": 0, "cid": "229", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/229" }, { "name": "Sulfate", "residue": "s", "count": 0, "cid": "1117", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/1117" }, { "name": "Other", "residue": "other", "count": 0 } ], "composition_expanded": [ { "name": "Alditol", "residue": "aldi", "count": 0 }, { "name": "6-Deoxy-Hexose", "residue": "dhex", "count": 2, "cid": "840", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/840" }, { "name": "6-Deoxy-Hexitol", "residue": "dhex+aldi", "count": 0 }, { "name": "L-Fucose", "residue": "fuc", "count": 2, "cid": "17106", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/17106" }, { "name": "L-Fucitol", "residue": "fuc+aldi", "count": 0, "cid": "445724", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/445724" }, { "name": "D-Galactose", "residue": "gal", "count": 5, "cid": "6036", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/6036" }, { "name": "D-Galactitol", "residue": "gal+aldi", "count": 0, "cid": "11850", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/11850" }, { "name": "N-Acetyl-D-galactosamine", "residue": "galnac", "count": 0, "cid": "35717", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/35717" }, { "name": "N-Acetylgalactosaminitol", "residue": "galnac+aldi", "count": 0, "cid": "165880", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/165880" }, { "name": "D-Galacturonic Acid", "residue": "gala", "count": 0, "cid": "439215", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/439215" }, { "name": "D-Glucose", "residue": "glc", "count": 0, "cid": "5793", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/5793" }, { "name": "D-Glucitol", "residue": "glc+aldi", "count": 0, "cid": "5780", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/5780" }, { "name": "D-Glucuronic acid", "residue": "glca", "count": 0, "cid": "94715", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/94715" }, { "name": "D-Glucosamine", "residue": "glcn", "count": 0, "cid": "439213", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/439213" }, { "name": "N-Acetyl-D-Glucosamine", "residue": "glcnac", "count": 7, "cid": "439174", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/439174" }, { "name": "N-Acetyl-D-glucosaminitol", "residue": "glcnac+aldi", "count": 0, "cid": "165206", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/165206" }, { "name": "Hexose", "residue": "hex", "count": 8, "cid": "206", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/206" }, { "name": "N-Acetylhexosamine", "residue": "hexnac", "count": 7, "cid": "899", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/899" }, { "name": "Hexuronic Acid", "residue": "hexa", "count": 0, "cid": "610", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/610" }, { "name": "2-Amino-2-Deoxy-Hexose", "residue": "hexn", "count": 0, "cid": "739", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/739" }, { "name": "Hexitol", "residue": "hex+aldi", "count": 0, "cid": "453", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/453" }, { "name": "N-Acetylhexosaminitol", "residue": "hexnac+aldi", "count": 0 }, { "name": "L-Iduronic acid", "residue": "idoa", "count": 0, "cid": "441039", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/441039" }, { "name": "D-Mannose", "residue": "man", "count": 3, "cid": "18950", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/18950" }, { "name": "D-Mannitol", "residue": "man+aldi", "count": 0, "cid": "6251", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/6251" }, { "name": "N-Acetyl-D-mannosamine", "residue": "mannac", "count": 0, "cid": "439281", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/439281" }, { "name": "Methyl", "residue": "me", "count": 0 }, { "name": "N-Acetyl-Neuraminic Acid", "residue": "neuac", "count": 4, "cid": "439197", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/439197" }, { "name": "N-Glycolyl-Neuraminic Acid", "residue": "neugc", "count": 0, "cid": "440001", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/440001" }, { "name": "Phosphate", "residue": "p", "count": 0, "cid": "1061", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/1061" }, { "name": "Pentose", "residue": "pent", "count": 0, "cid": "229", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/229" }, { "name": "Sulfate", "residue": "s", "count": 0, "cid": "1117", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/1117" }, { "name": "Sialic acid", "residue": "sia", "count": 4 }, { "name": "Other", "residue": "other", "count": 0 }, { "name": "Floating substituent", "residue": "x", "count": 0 }, { "name": "D-Xylose", "residue": "xyl", "count": 0, "cid": "135191", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/135191" }, { "name": "Ketodeoxynononic acid", "residue": "kdn", "count": 0, "cid": "13991616", "url": "https://pubchem.ncbi.nlm.nih.gov/compound/13991616" } ], "motifs": [ { "id": "GGM.000001", "name": "Type 2 LN", "synonym": "N-acetyllactosamine", "keywords": "LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2" }, { "id": "GGM.000002", "name": "Type 2 LN2", "synonym": "i antigen", "keywords": "LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2" }, { "id": "GGM.000018", "name": "Lewis x", "synonym": "Le^x; Lex; SSEA-1", "keywords": "Lewis x" }, { "id": "GGM.000033", "name": "VIM-2", "synonym": "", "keywords": "" }, { "id": "GGM.000034", "name": "3-Sialyl-LN (type 2)", "synonym": "", "keywords": "LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2" } ], "interactions": [], "expression": [ { "category": "tissue", "tissue": { "name": "mammalian vulva", "namespace": "UBERON", "id": "0000997", "url": "http://purl.obolibrary.org/obo/UBERON_0000997" }, "cell_line": {}, "abundance": "", "evidence": [ { "id": "2608", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/structures/2608" }, { "id": "10988252", "database": "PubMed", "url": "https://glygen.org/publication/PubMed/10988252" } ], "uniprot_canonical_ac": "P00533-1" } ], "subsumption": [ { "related_accession": "G02246MA", "relationship": "ancestor" }, { "related_accession": "G06327TZ", "relationship": "ancestor" }, { "related_accession": "G24271GS", "relationship": "ancestor" }, { "related_accession": "G50419BC", "relationship": "ancestor" }, { "related_accession": "G55848QM", "relationship": "ancestor" }, { "related_accession": "G59920UA", "relationship": "ancestor" }, { "related_accession": "G66106WQ", "relationship": "ancestor" }, { "related_accession": "G67850YF", "relationship": "ancestor" }, { "related_accession": "G98872RI", "relationship": "ancestor" }, { "related_accession": "G67850YF", "relationship": "basecomposition" }, { "related_accession": "G02246MA", "relationship": "composition" }, { "related_accession": "G66106WQ", "relationship": "subsumedby" }, { "related_accession": "G59920UA", "relationship": "topology" } ], "names": [], "keywords": [ "fully_determined" ], "glycotree_pathways": [], "dictionary": {}, "biomarkers": [], "section_stats": [ { "table_id": "glycoprotein", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_id", "tax_name", "tax_common_name" ] }, { "table_id": "expression", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [ "category", "tissue.name", "tissue.namespace", "tissue.id", "tissue.url", "abundance", "uniprot_canonical_ac" ] }, { "table_id": "expression_tissue", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [ "category", "tissue.name", "tissue.namespace", "tissue.id", "tissue.url", "abundance", "uniprot_canonical_ac" ] }, { "table_id": "expression_cell_line", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [ "category", "abundance", "uniprot_canonical_ac" ] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }