{
    "bcoid": "GLY_001386",
    "title": "Mouse C-mannosylation Glycosylation Sites citations",
    "description": "This dataset contains publication information for the Mouse C-mannosylation Glycosylation Sites dataset: ...",
    "filename_list": "mouse_proteoform_citations_glycosylation_sites_c_man.csv",
    "filename": "mouse_proteoform_citations_glycosylation_sites_c_man.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Mus musculus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q8K1S4-1...",
                "Distinct C-m..."
            ],
            [
                "P20917-1...",
                "Structural b..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                }
            ],
            [
                "Q8K1S4-1",
                "Distinct C-mannosylation of netrin receptor thrombospondin type 1 repeats by mammalian DPY19L1 and DPY19L3.",
                "Proceedings of the National Academy of Sciences of the United States of America",
                "2017 Mar 7",
                "Shcherbakova A, Tiemann B, Buettner FF, Bakker H",
                "protein_xref_pubmed",
                "28202721",
                "protein_xref_glygen_ds",
                "GLY_001255",
                "G61491DK"
            ],
            [
                "P20917-1",
                "Structural basis of myelin-associated glycoprotein adhesion and signalling.",
                "Nature communications",
                "2016 Dec 6",
                "Pronker MF, Lemstra S, Snijder J, Heck AJ, Thies-Weesie DM, Pasterkamp RJ, Janssen BJ",
                "protein_xref_pubmed",
                "27922006",
                "protein_xref_glygen_ds",
                "GLY_001255",
                "G61491DK"
            ]
        ]
    },
    "readme": "Name\n   - Mouse C-mannosylation Glycosylation Sites citations\n\nVersion\n   - v-2.8.1\n\nModified on\n   - 2025-03-13T12:18:36.546Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - This dataset contains publication information for the Mouse C-mannosylation Glycosylation Sites dataset: https://data.glygen.org/GLY_001255. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - Literature\n   - PubMed\n   - C-mannosylation\n   - C-Man\n\n   Pipeline Steps\n   - Step-1: The script maps the canonical UniProt protein C-Man sites in the dataset to the origin publication.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: mouse_proteoform_glycosylation_sites_c_man.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/mouse_proteoform_glycosylation_sites_c_man.csv\n   Output Subdomain\n      Name: mouse_proteoform_citations_glycosylation_sites_c_man.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/mouse_proteoform_citations_glycosylation_sites_c_man.csv\n      Name: mouse_proteoform_citations_glycosylation_sites_c_man.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/mouse_proteoform_citations_glycosylation_sites_c_man.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"3\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"3\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"3\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"3\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"3\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"3\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"1\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/mouse_proteoform_citations_glycosylation_sites_c_man.csv"
}