{
    "bcoid": "GLY_001381",
    "title": "Hamster Protein Citations (RefSeq)",
    "description": "The Hamster Protein Citations (RefSeq) datasets contains Cricetulus griseus [taxid:10029] UniProtKB accessions ...",
    "filename_list": "hamster_protein_citations_refseq.csv",
    "filename": "hamster_protein_citations_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Cricetulus griseus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "G3I8R9-1...",
                "AMPylation t..."
            ],
            [
                "G3I8R9-1...",
                "Allosteric f..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "G3I8R9-1",
                "AMPylation targets the rate-limiting step of BiP's ATPase cycle for its functional inactivation.",
                "eLife",
                "2017-10-24",
                "Preissler Steffen, Rohland Lukas, Yan Yahui, Chen Ruming, Read Randy J, Ron David",
                "protein_xref_pubmed",
                "29064368",
                "protein_xref_refseq",
                "NP_001233668"
            ],
            [
                "G3I8R9-1",
                "Allosteric fine-tuning of the conformational equilibrium poises the chaperone BiP for post-translational regulation.",
                "eLife",
                "2017-10-24",
                "Wieteska Lukasz, Shahidi Saeid, Zhuravleva Anastasia",
                "protein_xref_pubmed",
                "29064369",
                "protein_xref_refseq",
                "NP_001233668"
            ]
        ]
    },
    "readme": "Name\n   - Hamster Protein Citations (RefSeq)\n\nVersion\n   - v-2.8.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Not Applicable []\n\nChecksum\n   - \n\nUsability Domain\n   - The Hamster Protein Citations (RefSeq) datasets contains Cricetulus griseus [taxid:10029] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors of corresponding RefSeq accessions). If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - RefSeq\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accessions to the UniProtKB Canonical accessions. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: hamster_protein_function_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/hamster_protein_function_refseq.csv\n   Output Subdomain\n      Name: hamster_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/hamster_protein_citations_refseq.csv\n      Name: hamster_protein_citations_refseq.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/hamster_protein_citations_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"7\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"10\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"9\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"9\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"10\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"10\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"7\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/hamster_protein_citations_refseq.csv"
}