{
    "bcoid": "GLY_001363",
    "title": "Hamster Reaction Participants (Rhea)",
    "description": "The Hamster Protein Reaction Participants (Rhea) dataset contains reactions participants information ...",
    "filename_list": "hamster_protein_participants_rhea.csv",
    "filename": "hamster_protein_participants_rhea.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Cricetulus griseus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Reaction Participants (Rhea)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "19993...",
                "G3H0K4-1..."
            ],
            [
                "14217...",
                "G3H0K4-1..."
            ]
        ],
        "headers": [
            "reaction_id...",
            "participant_..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "reaction_id"
                },
                {
                    "type": "string",
                    "label": "participant_id"
                },
                {
                    "type": "string",
                    "label": "participant_name"
                },
                {
                    "type": "string",
                    "label": "role"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_type"
                }
            ],
            [
                "19993",
                "G3H0K4-1",
                "",
                "enzyme",
                "G3H0K4",
                "UniProtKB"
            ],
            [
                "14217",
                "G3H0K4-1",
                "",
                "enzyme",
                "G3H0K4",
                "UniProtKB"
            ]
        ]
    },
    "readme": "Name\n   - Hamster Reaction Participants (Rhea)\n\nVersion\n   - v-2.8.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Hamster Protein Reaction Participants (Rhea) dataset contains reactions participants information for pathways for Cricetulus griseus [taxid:10029] UniProtKB accessions that includes reaction IDs, participant ID, participant name, role, xref ID etc from Rhea database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB, Rhea and GlyGen\n\nDescription Domain\n   Keywords\n   - Rhea\n   - Participants\n   - Reactions\n\n   Pipeline Steps\n   - Step-1: The script loads the Rhea participant data from the triplestore containing triples from nt file to retrieve the information extracts the dataset in the csv format.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-cricetulus-griseus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2025_01_17/uniprot-proteome-cricetulus-griseus.nt\n   Output Subdomain\n      Name: hamster_protein_participants_rhea.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/hamster_protein_participants_rhea.csv\n      Name: hamster_protein_participants_rhea.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/hamster_protein_participants_rhea.stat.csv\n\nFields\n      Name: \"reaction_id\"\n     Description: \"The identifier assigned to a reaction in Reactome database\"\n      Unique Values: \"2201\"\n      Name: \"participant_id\"\n     Description: \"\"\n      Unique Values: \"2072\"\n      Name: \"participant_name\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"role\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"2072\"\n      Name: \"xref_type\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/hamster_protein_participants_rhea.csv"
}