{
    "bcoid": "GLY_001293",
    "title": "Zebrafish Proteoform Phosphorylation Citations (iPTMnet)",
    "description": "The Zebrafish Proteoform Citations (iPTMNet) contains Danio rerio [TaxID:7955] publication information ...",
    "filename_list": "zebrafish_proteoform_citations_phosphorylation_sites_iptmnet.csv",
    "filename": "zebrafish_proteoform_citations_phosphorylation_sites_iptmnet.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Danio rerio"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Phosphorylation Citations (iPTMnet)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "A1YB07-1...",
                "Angiomotin-l..."
            ],
            [
                "E7EZF3-1...",
                "UHRF1 phosph..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "A1YB07-1",
                "Angiomotin-like2 gene (amotl2) is required for migration and proliferation of endothelial cells during angiogenesis.",
                "The Journal of biological chemistry",
                "2011 Nov 25",
                "Wang Y, Li Z, Xu P, Huang L, Tong J, Huang H, Meng A",
                "protein_xref_pubmed",
                "21937427",
                "protein_xref_iptmnet",
                "A1YB07"
            ],
            [
                "E7EZF3-1",
                "UHRF1 phosphorylation by cyclin A2/cyclin-dependent kinase 2 is required for zebrafish embryogenesis.",
                "Molecular biology of the cell",
                "2012 Jan",
                "Chu J, Loughlin EA, Gaur NA, SenBanerjee S, Jacob V, Monson C, Kent B, Oranu A, Ding Y, Ukomadu C, Sadler KC",
                "protein_xref_pubmed",
                "22072796",
                "protein_xref_iptmnet",
                "E7EZF3"
            ]
        ]
    },
    "readme": "Name\n   - Zebrafish Proteoform Phosphorylation Citations (iPTMnet)\n\nVersion\n   - v-2.8.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Zebrafish Proteoform Citations (iPTMNet) contains Danio rerio [TaxID:7955] publication information of phosphorylated proteins from iPTMnet. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from iPTMnet. If you use this dataset please provide proper attribution to iPTMnet and GlyGen.\n\nExecution Domain\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: zebrafish_proteoform_phosphorylation_sites_iptmnet.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/zebrafish_proteoform_phosphorylation_sites_iptmnet.csv\n   Output Subdomain\n      Name: zebrafish_proteoform_citations_phosphorylation_sites_iptmnet.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/zebrafish_proteoform_citations_phosphorylation_sites_iptmnet.csv\n      Name: zebrafish_proteoform_citations_phosphorylation_sites_iptmnet.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/zebrafish_proteoform_citations_phosphorylation_sites_iptmnet.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"96\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"14\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"13\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"14\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"14\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"14\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"96\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/zebrafish_proteoform_citations_phosphorylation_sites_iptmnet.csv"
}