{
    "bcoid": "GLY_001126",
    "title": "GlyGen-Flybase Crossreferences Mapping",
    "description": "The GlyGen-Flybase Cross-references Mapping dataset contains GlyGen's Drosophila melanogaster [taxid:7227] ...",
    "filename_list": "protein_glygen_flybase_linkout.tsv",
    "filename": "protein_glygen_flybase_linkout.tsv",
    "filetype": "tsv",
    "categories": {
        "species": [
            "Drosophila melanogaster"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "GlyGen-Flybase Crossreferences"
        ],
        "file_type": [
            "tsv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "external"
        ]
    },
    "minitable": {
        "content": [
            [
                "FBgn0263772...",
                "GlyGen..."
            ],
            [
                "FBgn0000635...",
                "GlyGen..."
            ]
        ],
        "headers": [
            "FlyBase ID...",
            "DBNAME..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "FlyBase ID"
                },
                {
                    "type": "string",
                    "label": "DBNAME"
                },
                {
                    "type": "string",
                    "label": "DBID"
                },
                {
                    "type": "string",
                    "label": "DBURL"
                }
            ],
            [
                "FBgn0263772",
                "GlyGen",
                "M9PJ12-1",
                "M9PJ12-1"
            ],
            [
                "FBgn0000635",
                "GlyGen",
                "P34082-1",
                "P34082-1"
            ]
        ]
    },
    "readme": "Name\n   - GlyGen-Flybase Crossreferences Mapping\n\nVersion\n   - v-2.8.1\n\nModified on\n   - 2024-07-24T13:28:13.683Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The GlyGen-Flybase Cross-references Mapping dataset contains GlyGen's Drosophila melanogaster [taxid:7227] UniProtKB accessions cross-referenced to FlyBase database identifiers. The dataset is created for the Flybase database to crosslink their protein page links to GlyGen protein pages, and is formatted as per the 'Links from FlyBase' guidelines where the DbName is GlyGen. The *linkout.tsv is four column TSV, Column 1 - FlyBase ID, Column 2 - DBNAME, Column 3 - DBID, Column 4 - DBURL. The database information file is named glygen_dbinfo.tsv that contains five lines and can be accessed from GlyGen Sharepoint.\n\nDescription Domain\n   Keywords\n   - crossreferences\n   - fruitfly\n   - GlyGen\n   - Flybase\n\n   Pipeline Steps\n   - Step-1: The script loads the fruitfly UniProtKB GlyGen accessions, maps them to their Flybase IDs, and extracts the data into the tsv dataset file.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Output Subdomain\n      Name: protein_glygen_flybase_linkout.tsv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/protein_glygen_flybase_linkout.tsv\n      Name: protein_glygen_flybase_linkout.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/protein_glygen_flybase_linkout.stat.csv\n\nFields\n      Name: \"FlyBase ID\"\n     Description: \"\"\n      Unique Values: \"13817\"\n      Name: \"DBNAME\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"DBID\"\n     Description: \"\"\n      Unique Values: \"13818\"\n      Name: \"DBURL\"\n     Description: \"\"\n      Unique Values: \"13818\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/protein_glygen_flybase_linkout.tsv"
}