{
    "bcoid": "GLY_001099",
    "title": "Arabidopsis Glycohydrolases",
    "description": "The Arabidopsis Glycohydrolases dataset contains a list of Arabidopsis thaliana [taxid:3702] glycohydrolases ...",
    "filename_list": "arabidopsis_protein_glycohydrolase.csv",
    "filename": "arabidopsis_protein_glycohydrolase.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Arabidopsis thaliana"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Glycohydrolases"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q93Y07-1...",
                "Arabidopsis ..."
            ],
            [
                "Q9ZVK1-1...",
                "Arabidopsis ..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "species..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "species"
                },
                {
                    "type": "string",
                    "label": "status"
                },
                {
                    "type": "string",
                    "label": "gene_symbol"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_protein_name"
                },
                {
                    "type": "string",
                    "label": "ec_number"
                },
                {
                    "type": "string",
                    "label": "brenda_ec_number"
                },
                {
                    "type": "string",
                    "label": "cazy_gh_family"
                },
                {
                    "type": "string",
                    "label": "interpro_id"
                },
                {
                    "type": "string",
                    "label": "pfam_ac"
                },
                {
                    "type": "string",
                    "label": "go_molecular_function"
                }
            ],
            [
                "Q93Y07-1",
                "Arabidopsis thaliana (Mouse-ear cress)",
                "reviewed",
                "SFR2",
                "Galactolipid galactosyltransferase SFR2, chloroplastic (EC 2.4.1.184) (Galactolipid:galactolipid galactosyltransferase) (GGGT) (Protein SENSITIVE TO FREEZING 2) (AtSFR2)",
                "2.4.1.184",
                "",
                "GH1",
                "IPR001360|IPR018120|IPR017853",
                "PF00232",
                "beta,beta digalactosyldiacylglycerol galactosyltransferase activity [GO:0102996]| beta-glucosidase activity [GO:0008422]| cellobiose glucosidase activity [GO:0080079]| galactolipid galactosyltransferase activity [GO:0046480]| galactosyltransferase activity [GO:0008378]| glycosyltransferase activity [GO:0016757]"
            ],
            [
                "Q9ZVK1-1",
                "Arabidopsis thaliana (Mouse-ear cress)",
                "reviewed",
                "XTH10",
                "Probable xyloglucan endotransglucosylase/hydrolase protein 10 (At-XTH10) (XTH-10) (EC 2.4.1.207)",
                "2.4.1.207",
                "",
                "GH16",
                "IPR044791|IPR013320|IPR000757|IPR010713|IPR016455",
                "PF00722|PF06955",
                "hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]| polysaccharide binding [GO:0030247]| xyloglucan:xyloglucosyl transferase activity [GO:0016762]"
            ]
        ]
    },
    "readme": "Name\n   - Arabidopsis Glycohydrolases\n\nVersion\n   - v-2.8.1\n\nModified on\n   - 2024-07-11T20:51:21.521Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Jeet Vora [jeetvora@gwu.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The Arabidopsis Glycohydrolases dataset contains a list of Arabidopsis thaliana [taxid:3702] glycohydrolases derived from UniProtKB database using advanced search and other databases including CAZy, InterPro and Pfam. . If you use this dataset please provide proper attribution to UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - glycohydrolase\n   - glycosidase\n   - EC Number\n   - CAZy\n\n   Pipeline Steps\n   - Step-1: The script maps and replaces the UniProtKb accession to the UniProtKB canonical accession\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: arabidopsis_protein_glycohydrolase.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/compiled/arabidopsis_protein_glycohydrolase.csv\n      Name: arabidopsis_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/arabidopsis_protein_masterlist.csv\n   Output Subdomain\n      Name: arabidopsis_protein_glycohydrolase.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/arabidopsis_protein_glycohydrolase.csv\n      Name: arabidopsis_protein_glycohydrolase.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/arabidopsis_protein_glycohydrolase.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"236\"\n      Name: \"species\"\n     Description: \"Species of the protein.\"\n      Unique Values: \"1\"\n      Name: \"status\"\n     Description: \"Status of the protein record in UniProtKB database that can be reviewed for UniProtKB/Swiss-Prot entry or unreviewed for UniProtKB/TrEMBL entry\"\n      Unique Values: \"1\"\n      Name: \"gene_symbol\"\n     Description: \"\"Official gene name/symbol assigned to the gene. Human gene names/symbols are approved by the HUGO Gene Nomenclature Committee (HGNC)\"\n      Unique Values: \"236\"\n      Name: \"uniprotkb_protein_name\"\n     Description: \"Name of the protein in UniProtKB database\"\n      Unique Values: \"236\"\n      Name: \"ec_number\"\n     Description: \"Enzyme Commision number assigned to an enzyme by Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n      Unique Values: \"37\"\n      Name: \"brenda_ec_number\"\n     Description: \"Enzyme Commission (EC) number assigned to enzyme in BRENDA database\"\n      Unique Values: \"24\"\n      Name: \"cazy_gh_family\"\n     Description: \"\"\n      Unique Values: \"31\"\n      Name: \"interpro_id\"\n     Description: \"InterPro Identifier\"\n      Unique Values: \"55\"\n      Name: \"pfam_ac\"\n     Description: \"Accession assigned to the protein family in the Pfam database\"\n      Unique Values: \"40\"\n      Name: \"go_molecular_function\"\n     Description: \"\"The elemental activities of a gene product at the molecular level\"\n      Unique Values: \"57\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/arabidopsis_protein_glycohydrolase.csv"
}