{
    "bcoid": "GLY_001055",
    "title": "Arabidopsis Protein Canonical sequences (UniProtKB)",
    "description": "The Arabidopsis Protein Canonical (UniProtKB) Sequences dataset contains Arabidopsis thaliana [taxid:3702] ...",
    "filename_list": "arabidopsis_protein_canonicalsequences.fasta",
    "filename": "arabidopsis_protein_canonicalsequences.fasta",
    "filetype": "fasta",
    "categories": {
        "species": [
            "Arabidopsis thaliana"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Canonical Protein fasta Sequences"
        ],
        "file_type": [
            "fasta"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "iconfilename": "fasta_icon_all.png",
    "sampledata": {
        "type": "html",
        "data": "<pre>\n>tr|Q58FU4-1|Q45GI1_ARATH Isoform 1 of HMG-box (High mobility group) DNA-binding family protein OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q58FU4-1\nMPELSCTQHSKERKRLKLLFTVRNRKNRRCALMAIRPRTRKRVQAVRRAADGSAFKKCEE\nCGVMIAIALYDMHECGEKRREVKRFKYIASGNIDNISKPIGSFEDEPRSPFVFFLEEFRE\nNYNGDLVDASRICFNVWKNMSAEDQKPFNARAMEVDSAHSRKLNEEAKTIYKADEEADSK\nTVGRYDKFYESYVQIEEEEDYDSSDHFGHEFWEDDTMLDY\n\n\n>sp|P42737-1|A8MQY4_ARATH Isoform 1 of Carbonic anhydrase OS=Arabidopsis thaliana OX=3702 GN=CA2 PE=1 SV=3 CANONICAL=P42737-1\nMVPFWTTVSRNGSSDSETTLQSASKATKQYKYPSLRPSHRLSLLFLFPFHLSANGACFRC\nTCFSHFKLELRRMGNESYEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSSDSKS\nFDPVERIKEGFVTFKKEKYETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFHPGDA\nFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSFPLDGNN\nSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCEREAVNVSLANLLTYPFVREGVVKG\nTLALKGGYYDFVNGSFELWELQFGISPVHSI\n\n\n>tr|A8MQY6-1|A8MQY6_ARATH Isoform 1 of ECA1 gametogenesis related family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=A8MQY6-1\nMSIKNVFSLLAVLCIIVSVNAQLSQFPAQLPFPFPFQLIPGLPDITKCFSSVMDIPGYIA\nEISQSIFTGKFDNLGPACCKAFLDADNCIPKISFISFFPPMLKEQCSRVAGATPPIPK\n\n\n>sp|A8MQY1-1|NAC68_ARATH Isoform 1 of NAC domain-containing protein 68 OS=Arabidopsis thaliana OX=3702 GN=NAC68 PE=1 SV=1 CANONICAL=A8MQY1-1\nMMKGLIGYRFSPTGEEVINHYLKNKLLGKYWLVDEAISEINILSHKPSKDLPKLARIQSE\nDLEWYFFSPIEYTNPNKMKMKRTTGSGFWKPTGVDREIRDKRGNGVVIGIKKTLVYHEGK\nSPHGVRTPWVMHEYHITCLPHHKRKYVVCQVKYKGEAAEISYEPSPSLVSDSHTVIAITG\nEPEPELQVEQPGKENLLGMSVDDLIEPMNQQEEPQGPHLAPNDDEFIRGLRHVDRGTVEY\nLFANEENMDGLSMNDLRIPMIVQQEDLSEWEGFNADTFFSDNNNNYNLNVHHQLTPYGDG\nYLNAFSGYNEGNPPDHELVMQENRNDHMPRKPVTGTIDYSSDSGSDAGSISTTSYQGTSS\nPNISVGSSSRHLSSCSSTDSCKDLQTCTDPSIISREIRELTQEVKQEIPRAVDAPMNNES\nSLVKTEKKGLFIVEDAMERNRKKPRFIYLMKMIIGNIISVLLPVKRLIPVKKL\n\n\n>sp|Q9LPK6-1|A8MQY2_ARATH Isoform 1 of Thioredoxin superfamily protein OS=Arabidopsis thaliana OX=3702 GN= PE=1 SV=1 CANONICAL=Q9LPK6-1\nMELLLPHPSNSTPLTVLGFLDRAASVYGDCPSILHTTNTVHTWSETHNRCLRIASALTSS\nSLGINRGQVVSVVGPNVPSVYELQFAVPMSGAILNNINPRLDAHALSVLLRHSESKLVFV\nDPNSISVVLEAVSFMRQNEKPHLVLLDDDQEDGSLSPSAASDFLDTYQGVMERGDSRFKW\nIRPQTEWQPMILNYTSGTTSSPKGVVLSHRAIFMLTVSSLLDWHFPNRPVYLWTLPMFHA\nNGWGYTWGTAAVGATNVCTRRVDAPTIYDLIDKHHVTHMCAAPMVLNMLTNYPSRKPLKN\nPVQVMTAGAPPPAAIISRAETLGFNVGHGYGLTETGGPVVSCAWKAEWDHLDPLERARLK\nSRQGVRTIGFAEVDVRDPRTGKSVEHDGVSVGEIVLKGGSVMLGYYKDPEGTAACMREDG\nWFYSGDVGVIHEDGYLEVKDRSKDVIICGGENISSAEVETVLYTNPVVKEAAVVAKPDKM\nWGETPCAFVSLKYDSNGNGLVTEREIREFCKTRLPKYMVPRKVIFQEELPKTSTGKIQKF\nLLRQMAKSLP\n\n\n>sp|Q3EAR7-1|A8MQY3_ARATH Isoform 1 of Exostosin family protein OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=2 CANONICAL=Q3EAR7-1\nMSNNSSKSFCLLGFPLILILLLSFLLFSSFPNNESPPQQFFSSLTMSSLLVHTNALQSSS\nSSSSLYSPPITVKRRSNLEKREEELRKARAAIRRAVRFKNCTSNEEVITYIPTGQIYRNS\nFAFHQSHIEMMKTFKVWSYKEGEQPLVHDGPVNDIYGIEGQFIDELSYVMGGPSGRFRAS\nRPEEAHAFFLPFSVANIVHYVYQPITSPADFNRARLHRIFNDYVDVVAHKHPFWNQSNGA\nDHFMVSCHDWAPDVPDSKPEFFKNFMRGLCNANTSEGFRRNIDFSIPEINIPKRKLKPPF\nMGQNPENRTILAFFAGRAHGYIREVLFSHWKGKDKDVQVYDHLTKGQNYHELIGHSKFCL\nCPSGYEVASPREVEAIYSGCVPVVISDNYSLPFNDVLDWSKFSVEIPVDKIPDIKKILQE\nIPHDKYLRMYRNVMKVRRHFVVNRPAQPFDVIHMILHSVWLRRLNIRLPS\n\n\n>sp|A8MQY8-1|ESFL9_ARATH Isoform 1 of EMBRYO SURROUNDING FACTOR 1-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=ESFL9 PE=2 SV=1 CANONICAL=A8MQY8-1\nMSSSRFLILCIILISFFPLHECENGKSVESNKAMKPVCMPVNCNNKDKKLTCACCIGANP\nRNRCYNSRSQCTADCKL\n\n\n>tr|A8MQY9-1|A8MQY9_ARATH Isoform 1 of Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN= PE=4 SV=1 CANONICAL=A8MQY9-1\nMSAARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSHRIFRSPVELSCCVETM\nLPYHTATASALLNSMLSVSGRSIWTFQGT\n\n\n>sp|Q9LYR2-1|UCRI2_ARATH Isoform 1 of Cytochrome b-c1 complex subunit Rieske-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UCR1-2 PE=1 SV=1 CANONICAL=Q9LYR2-1\nMLRVAGRRLFSVSQRSSTATSFVLSRDHTLSDGGNSSSASRSVPSADLSSFNSYHRSVIR\nGFASQVITQGNEIGFGSEVPATVEAVKTPNSKIVYDDHNHERYPPGDPSKRAFAYFVLSG\nGRFVYASVLRLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRGKPVFIRRRT\nEDDIKLANSVDVGSLRDPQEDSVRVKNPEWLIVVGVCTHLGCIPLPNAGDYGGWFCPCHG\nSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG\n\n\n</pre>"
    },
    "readme": "Name\n   - Arabidopsis Protein Canonical sequences (UniProtKB)\n\nVersion\n   - v-2.8.1\n\nCreated on\n  - 2024-07-08T13:28:04\n\nModified on\n   - 2024-07-08T13:30:22.604Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Arabidopsis Protein Canonical (UniProtKB) Sequences dataset contains Arabidopsis thaliana [taxid:3702] canonical protein fasta sequences from the UniProtKB database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - protein sequence\n   - fasta\n   - UniProtKB canonical accessions\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB fasta sequence for all chicken canonical accessions data from the triplestore containing triples from nt file and extracts it into a dataset as fasta format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-arabidopsis-thaliana.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2025_01_17/uniprot-proteome-arabidopsis-thaliana.nt\n   Output Subdomain\n      Name: arabidopsis_protein_canonicalsequences.fasta\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/arabidopsis_protein_canonicalsequences.fasta\n      Name: arabidopsis_protein_canonicalsequences.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/arabidopsis_protein_canonicalsequences.stat.csv\n\nFields\n      Name: \"sequence\"\n     Description: \"Amino acid sequence\"\n      Unique Values: \"27448\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/arabidopsis_protein_canonicalsequences.fasta"
}