{
    "bcoid": "GLY_001025",
    "title": "Chicken Reactions (Rhea)",
    "description": "The Chicken Protein Reactions (Rhea) dataset contains reactions information for pathways for Gallus gallus ...",
    "filename_list": "chicken_protein_reactions_rhea.csv",
    "filename": "chicken_protein_reactions_rhea.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Reactions Rhea"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "10040...",
                "..."
            ],
            [
                "10100...",
                "..."
            ]
        ],
        "headers": [
            "reaction_id...",
            "reaction_nam..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "reaction_id"
                },
                {
                    "type": "string",
                    "label": "reaction_name"
                },
                {
                    "type": "string",
                    "label": "cellular_location"
                },
                {
                    "type": "string",
                    "label": "pmid"
                },
                {
                    "type": "string",
                    "label": "pathway_id"
                },
                {
                    "type": "string",
                    "label": "equation"
                },
                {
                    "type": "string",
                    "label": "reaction_summary"
                }
            ],
            [
                "10040",
                "",
                "",
                "",
                "",
                "adenosine 3',5'-bisphosphate + H2O = AMP + phosphate",
                ""
            ],
            [
                "10100",
                "",
                "",
                "",
                "",
                "a sterol ester + H2O = a sterol + a fatty acid + H(+)",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Chicken Reactions (Rhea)\n\nVersion\n   - v-2.8.1\n\nCreated on\n  - 2021-06-03T17:38:21.320871\n\nModified on\n   - 2024-05-23T16:52:58.428Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken Protein Reactions (Rhea) dataset contains reactions information for pathways for Gallus gallus [taxid:9031] UniProtKB accessions that includes reaction participants ID, reaction ID, pathway ID, summary etc from Rhea database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB, Rhea and GlyGen.\n\nDescription Domain\n   Keywords\n   - Rhea\n   - reactions\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the Rhea reaction annotations triplestore containing triples from nt file and extracts the data as a csv dataset.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-gallus-gallus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2025_01_17/uniprot-proteome-gallus-gallus.nt\n   Output Subdomain\n      Name: chicken_protein_reactions_rhea.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/chicken_protein_reactions_rhea.csv\n      Name: chicken_protein_reactions_rhea.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/chicken_protein_reactions_rhea.stat.csv\n\nFields\n      Name: \"reaction_id\"\n     Description: \"The identifier assigned to a reaction in Reactome database\"\n      Unique Values: \"3691\"\n      Name: \"reaction_name\"\n     Description: \"The name assigned to a reaction in Reactome database\"\n      Unique Values: \"1\"\n      Name: \"cellular_location\"\n     Description: \"The loaction in the cell where reaction occurs\"\n      Unique Values: \"1\"\n      Name: \"pmid\"\n     Description: \"NCBI PubMed database Identifier\"\n      Unique Values: \"1\"\n      Name: \"pathway_id\"\n     Description: \"Pathway Identifier\"\n      Unique Values: \"1\"\n      Name: \"equation\"\n     Description: \"\"\n      Unique Values: \"3691\"\n      Name: \"reaction_summary\"\n     Description: \"\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/chicken_protein_reactions_rhea.csv"
}