{
    "bcoid": "GLY_001015",
    "title": "Chicken Proteoform Glycosylation Citations (UniProtKB)",
    "description": "The Chicken Proteoform Glycosylation Citations (UniProtKB) dataset contains Gallus gallus [taxid:9031] ...",
    "filename_list": "chicken_proteoform_citations_glycosylation_sites_uniprotkb.csv",
    "filename": "chicken_proteoform_citations_glycosylation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations UniProtKB"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q98UI9-1...",
                "N-glycosylat..."
            ],
            [
                "Q90744-1...",
                "The 1.9 A st..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                }
            ],
            [
                "Q98UI9-1",
                "N-glycosylation of ovomucin from hen egg white.",
                "Glycoconjugate journal",
                "2011-05",
                "Offengenden Marina, Fentabil Messele A, Wu Jianping",
                "protein_xref_pubmed",
                "21484392",
                "protein_xref_uniprotkb_gly",
                "Q98UI9",
                ""
            ],
            [
                "Q90744-1",
                "The 1.9 A structure of alpha-N-acetylgalactosaminidase: molecular basis of glycosidase deficiency diseases.",
                "Structure (London, England : 1993)",
                "2002-03",
                "Garman Scott C, Hannick Linda, Zhu Alex, Garboczi David N",
                "protein_xref_pubmed",
                "12005440",
                "protein_xref_uniprotkb_gly",
                "Q90744",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Chicken Proteoform Glycosylation Citations (UniProtKB)\n\nVersion\n   - v-2.8.1\n\nCreated on\n  - 2021-06-03T16:32:02.053252\n\nModified on\n   - 2024-05-29T19:23:13.269Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken Proteoform Glycosylation Citations (UniProtKB) dataset contains Gallus gallus [taxid:9031] citation details of the publications present in the dataset Chicken Glycosylation Sites (UniProtKB) (https://data.glygen.org/GLY_000965).\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB publication data from the triplestore containing triples from nt file to retrieve the publication information associated with the UniProtKB accession and maps it to the UniProtKB canonical accessions. The script also filters out publications of large scale studies, and high frequency publications pertaining to DNA sequencing, cDNA, chromosomes using blacklisted PMIDs file.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: chicken_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/chicken_proteoform_glycosylation_sites_uniprotkb.csv\n   Output Subdomain\n      Name: chicken_proteoform_citations_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/chicken_proteoform_citations_glycosylation_sites_uniprotkb.csv\n      Name: chicken_proteoform_citations_glycosylation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/chicken_proteoform_citations_glycosylation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"25\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"29\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"16\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"28\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"29\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"29\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"25\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/chicken_proteoform_citations_glycosylation_sites_uniprotkb.csv"
}