{
    "bcoid": "GLY_000930",
    "title": "Pig Protein Citations (RefSeq)",
    "description": "The Pig Protein Citations (RefSeq) datasets contains Sus scrofa [taxid:9823] UniProtKB accessions mapped ...",
    "filename_list": "pig_protein_citations_refseq.csv",
    "filename": "pig_protein_citations_refseq.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Sus scrofa"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q9TUB2-1...",
                "Coronavirus ..."
            ],
            [
                "Q29010-1...",
                "Changes of v..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "Q9TUB2-1",
                "Coronavirus Porcine Epidemic Diarrhea Virus Nucleocapsid Protein Interacts with p53 To Induce Cell Cycle Arrest in S-Phase and Promotes Viral Replication.",
                "Journal of virology",
                "2021-07-26",
                "Su Mingjun, Shi Da, Xing Xiaoxu, Qi Shanshan, Yang Dan, Zhang Jiyu, Han Yuru, Zhu Qinghe, Sun Haibo, Wang Xiaoran, Wu Haoyang, Wang Meijiao, Wei Shan, Li Chunqiu, Guo Donghua, Feng Li, Sun Dongbo",
                "protein_xref_pubmed",
                "34037422",
                "protein_xref_refseq",
                "NP_998989"
            ],
            [
                "Q29010-1",
                "Changes of vasoregulatory gene expression following hepatic ischemia/reperfusion and treatment with endothelin-A receptor blockade.",
                "Journal of cardiovascular pharmacology",
                "2004-11",
                "Uhlmann Dirk, Gaebel Gabor, Teupser Daniel, Armann Barbara, Tannapfel Andrea, Ludwig Stefan, Pietsch Uta-Carolin, Fiedler Georg Martin, Hauss Johann, Witzigmann Helmut",
                "protein_xref_pubmed",
                "15838252",
                "protein_xref_refseq",
                "NP_999394"
            ]
        ]
    },
    "readme": "Name\n   - Pig Protein Citations (RefSeq)\n\nVersion\n   - v-2.8.1\n\nCreated on\n  - \n\nModified on\n   - 2024-05-17T11:24:18.771Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Pig Protein Citations (RefSeq) datasets contains Sus scrofa [taxid:9823] UniProtKB accessions mapped to publication information (pmid, title, journal name, publication, date, authors of corresponding RefSeq accessions.  If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen.\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - RefSeq\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: pig_protein_function_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/pig_protein_function_refseq.csv\n   Output Subdomain\n      Name: pig_protein_citations_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/pig_protein_citations_refseq.csv\n      Name: pig_protein_citations_refseq.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/pig_protein_citations_refseq.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"779\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"1709\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"440\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"737\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"1698\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"1710\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"779\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/pig_protein_citations_refseq.csv"
}