{
    "bcoid": "GLY_000915",
    "title": "Pig Protein Canonical sequences (UniProtKB)",
    "description": "The Pig Protein Canonical (UniProtKB) Sequences dataset contains Sus scrofa [taxid:9823] canonical protein ...",
    "filename_list": "pig_protein_canonicalsequences.fasta",
    "filename": "pig_protein_canonicalsequences.fasta",
    "filetype": "fasta",
    "categories": {
        "species": [
            "Sus scrofa"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Canonical Protein fasta Sequences"
        ],
        "file_type": [
            "fasta"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "iconfilename": "fasta_icon_all.png",
    "sampledata": {
        "type": "html",
        "data": "<pre>\n>tr|A0A8W4F999-1|A0A8W4F999_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=4 SV=1 CANONICAL=A0A8W4F999-1\nMNVKNVGRPLFVVPNFSNNIRFILERNSMNVHNVGRPLFVPHNLLNIRELILPRSPINAR\nNVGKPLSVAQNLPDIRAFTLAKNPMNVRNVGRALDRLHTLLNISRFIL\n\n\n>tr|A0A287BQ89-1|A0A4X1U1I8_PIG Isoform 1 of Cytosolic iron-sulfur assembly component 2A OS=Sus scrofa OX=9823 GN=CIAO2A PE=3 SV=1 CANONICAL=A0A287BQ89-1\nMERVSGLLSRTLNRVLWLSGLFERGAARQPRIMEEKALEVYDLIRTIRDPEKPNTLEELE\nVVSESCVEVQEINEEDYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLEIYISE\nGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCVLEPD\n\n\n>tr|A0A4X1U3C8-1|A0A8W4F993_PIG Isoform 1 of Cathepsin C OS=Sus scrofa OX=9823 GN=CTSC PE=1 SV=1 CANONICAL=A0A4X1U3C8-1\nMGPRLGSLLSALLLLLYVAGTAHCDTPANCTYPDLLGTWIFHVGPGGSQRDVNCSVMGPP\nEKKVVVHLKKLDTAYDDFGNSGRFTIIYNQGFEIVLNDYKWFAFFKYKEEGRKVTSYCNE\nTMTGWVHDVLGRNWACFTGEKAGNTFEKVNVNTAHLKSRQKKYSNRLYKYNHDFVKAING\nIQKSWTATAYMEYETLTLKEMTQRGGGYNQRLPRPKPAPITAEIQEKSLHLPASWDWRNV\nRGTNFVTPVRNQASCGSCYSFASMGMMEARIRILTNNTQTPILSPQEVVSCSQYAQGCAG\nGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCTVKEGCFRYYSSEYHYVGGFYGGCNEALM\nKLELVHHGPMAVAFEVYDDFLHYRKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDLASGM\nDYWIVKNSWGTSWGEDGYFRIRRGTDECAIESIAVAATPIPKL\n\n\n>tr|A0A287BSN5-1|A0A8W4F992_PIG Isoform 1 of Zinc finger protein 446 OS=Sus scrofa OX=9823 GN=ZNF446 PE=4 SV=2 CANONICAL=A0A287BSN5-1\nMPSPLGPPSLPSLDSEATLEEPEAARQRFRGFCYQEAAGPHEALARLRELCHQWLQPEAH\nSKEQMLELLVLEQFLGALPPEIQAWVRGQRPGSPEEAAVLVEGLQHDPGQLLSWITAHVL\nKRAVLPAAQKTEKSVRSSHPSEPVEPLRAASGEGSNDAQMEGGAHPSCSVKEEPAGYGQE\nTAPSSPLNPATSHERCLERQEPTSAPFHPSRIQEEWGLLDPSQKELYWDVMLEKYGTVVS\nLGLPRPLPEALAESEPEGLSPGPEGQRSLRPGKGPPAPGGWGRERGPGVAGDLALPRLPP\nAGESASSGAEGPSGRPGAPPPAAWEGPSAAAAPPPPPPPRSKRYTCAQCGRAFDWKSVFV\nIHRRAHANAPGAETPPQAPPRRAPPGPRSYSCEECGRSFSWKSQLVIHRKSHAGQRRHLC\nGDCGHSFDWKSQLVIHLKSHRPEAP\n\n\n>tr|F1RV90-1|A0A8W4F991_PIG Isoform 1 of Male germ cell associated kinase OS=Sus scrofa OX=9823 GN=MAK PE=1 SV=4 CANONICAL=F1RV90-1\nMNRYTTMRQLGDGTYGSVLMGKSNESGELVAIKRMKRKFYSWDECMNLREVKSLKKLNHA\nNVIKLKEVIRENDHLYFIFEYMKENLYQLMKDRNKLFPESVIRNIMYQILQGLAFIHKHG\nFFHRDMKPENLLCMGPELVKIADFGLARELRSQPPYTDYVSTRWYRAPEVLLRSSVYSSP\nIDVWAVGSIMAELYTLRPLFPGTSEVDEIFKICQVLGTPKKSDWPEGYQLASSMNFRFPQ\nCAPINLKTLIPNASNEAIQLMTEMLSWDPKKRPTASQALKHPYFQVGQVLGPSSHHLESK\nQPLNKQVQPLESKPSVGDLEPKLLPDINDQTAGQPQPRNSHQPLQSIQPPQDTSGQQAPK\nQQSQQKQPQTLFPRIVKNMPIKPNGTLGHKGARRRWGPTVFKAGDSGEESEDYDFGASHS\nKKPSMGVFKETRRKDSPFRLPEPVPTGSNHSSGENKSLTAAGSLKSDSELSTASAAKQYY\nLKQSRYLPGVNPKNVSLVTRGKDINPYSWNNQLFPKSLGPIGAELAFKRNNAGTLGSYAT\nYNQSGYIPSFLKKEVGSAGQRIPLVPLGATASEYSWNTKMGRGQFSGPTYNPTAKNLNMV\nNRAQPVPSVHGRTDWVAKYGGHR\n\n\n>tr|F1S708-1|A0A8W4F990_PIG Isoform 1 of Tenascin N OS=Sus scrofa OX=9823 GN=TNN PE=3 SV=5 CANONICAL=F1S708-1\nMGLQEMFCFLLALLFGSVLLVASAPATLESPGCSNKEQQVTVSHTYKIDVPKSALVQVEA\nDPQPLSDDGTSLLAPGETEEQNIIFRHNIRLQTPQKDCELAGSVQDLLARVKKLEEEMAE\nVKEQCSAQRCCPRAAGLSHHCSGHGTFSPVTCSCHCEQGWEGADCERPACPGACSGHGQC\nVDGRCLCEQPYVGIDCAYPACPENCSGHGACVRGVCQCHEDFTSEDCSERRCPGDCSGHG\nFCDTGECYCEEGFTGLDCSQVVAPQGLQLLKSTEDSLLVSWEPSSQVDHYLLSYYPLGKE\nRSVKQIQVPKEQHSYEILGLLPGTKYIVTLRNVKKEISSSPQHLLATTDLAVLGTAWVTD\nETENSLDVEWENPSTEVDYYKLQYGPLTGQEVAEVTVPKSSDPKSRYDITGLQPGTEYKI\nTVVPMRGDLEGKPILLNGRTEIDSPTNVVTDQVTEDTAVVSWDPVRAVIDKYVVRYISAD\nGETKDTAVPKEQSSTVLTGLKPGEAYEVYVWAERGSQESKKADTNALTEIDSPKNLVTDL\nVTENTATVSWDPVQADIDRYLVRYTSADGDTREVPVGKEKSSTVLTGLRPGVEYTVHVWA\nQKGDRESGKADTTAPTEIDSPKNLVTNQVTENTATVSWDPVQAVIDRYLVRYTSADGDTR\nEVPVGKEQSSTVLTGLRPGMEYTVHVWAQKGDRESGKADTMAPTDLDSPKNLVTTQVTEN\nTATVSWDPVQAVIDRYLVRYTSADGDTREVPVGKEQSSTILTGLRPGVEYTVHVWAQKGD\nRESGKADTTAPTDLDSPKNLVTTQVTENTATVSWDPVQAVIDRYLVRYTSADGDTREVPV\nGKEQSSTILMGLRPGVEYTVHVWAQKGDRESRKADTTAPTDIDSPKNLVTTQVTENTATV\nSWDPVQAVIDRYLVRYTSADGDTREVPVGKEQSSTVLTGLRPGVEYTVHVWAQKGDRESR\nKADTTAPTDIDSPKNLVTTQVTENTATVSWDPVQAVIDRYLVRYTSADGDTREVPVGKEQ\nSSTVLTGLRPGMEYTVHVWAQKGDRESKKADTMAPTEIDSPQNLVTTRVTENTATVSWDP\nVQAVIDRYLVRYTSADGDTREVPVGKEQSSTVLMGLRPGVEYTVHVWAQKGDRESRKADT\nTALTDIDPPQNLRPSSVTQSSGVLTWKPPSAQIDGYILTYQFPDGTVKEVQLGRGDQRFE\nLQGLEQGVTLPVSLVAFKGDRRSRSISTTLSTVGARFPHPSDCSQVQQNSNVASGLYTIY\nLHGDASRPLQVYCDMDTDGGGWIVFQRRNTGQLDFFKRWRTYVEGFGDPMKEFWLGLDKL\nHNLTTGTPTRYEVRVDLQTANESAFAIYDFFQVASSKERYRLTVGKYRGTAGDALTYHNG\nWKFTTFDRDNDIALSNCALTHHGGWWYKNCHLANPNGRYGETKHSEGVNWEPWKGHEFSI\nPFVELKIRPHGYSGEHVLGRKKRTLGESSRTF\n\n\n>tr|A0A8W4FMS3-1|A0A8W4F997_PIG Isoform 1 of Rho GTPase-activating protein 26 OS=Sus scrofa OX=9823 GN=ARHGAP26 PE=1 SV=1 CANONICAL=A0A8W4FMS3-1\nMGLPALEFSDCCLDSPHFRETLKSHEAELDKTNKFIKELIKDGKSLISALKNLSSAKRKF\nADSLNEFKFQCIGDAETDDEMCIARSLQEFATVLRNLEDERIRMIENASEVLLTPLEKFR\nKEQIGAAKEAKKKYDKETEKYCGILEKHLNLSSKKKESQLQEADSQVDLVRQHVYEVSLE\nYVFKVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFSDFKTQLTISIQNTRNRFE\nGTRSEVESLMRKMKENPLEHKTISPYTMEGYLYVQEKRHFGTSWVKHYCTYQRDSKQITM\nVPFDQKSGGKGGEDESVTLKSCTRRKTDSIEKRFCFDVEAVDRPGVITMQALSEEDRRLW\nMEAMDGREPVYNSNRDSQSEGTAQLDSIGFSIIRKCIHAVETRGINEQGLYRIVGVNSRV\nQKLLSVLMDPKAAAETEADICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAKLE\nNQESRVSEIHSLVHRLPEKNRQMLQMLMNHLANVANNHKQNLMTVANLGVVFGPTLLRPQ\nEETVAAIMDIKFQNIVVEILIENHEKIFNTVPDAPLANTLHLSRKKSGDSKPPSCSERPL\nTLFHTTQSTDRQEQRNSLINSSLESVVSSNANSILNSSSSLQPNMNSSDPDLDTLKPARP\nNSLPPNPSPTSPLSPSWPMFSAPSSPMPTSSTSSDSSPIRSVAGFVCFSVAAVVLSLAWS\nSLHAVFSLLANFVPCHPNLHLLFDRPEEAVREDSSVPFRKAKALYACKAEHDSELSFTAG\nTVFENVHPSQEPGWLEGTLNGKTGLIPENYVEFL\n\n\n>tr|I3LBH0-1|A0A8W4F995_PIG Isoform 1 of Reticulon OS=Sus scrofa OX=9823 GN=RTN1 PE=1 SV=1 CANONICAL=I3LBH0-1\nMQATADSTKMDCVWSNWKSQAIDLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLA\nLAALSATISFRIYKSVLQAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLK\nELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQ\nYLGLVRTHINAVVAKIQAKIPGAKRHAE\n\n\n>tr|F1SBU6-1|A0A8W4F994_PIG Isoform 1 of Cation channel sperm-associated auxiliary subunit delta OS=Sus scrofa OX=9823 GN=CATSPERD PE=3 SV=4 CANONICAL=F1SBU6-1\nMLVLMLVTVTILRLCLLSRAQPLCRSRMVRTGKVFHDGQKIQGDQLYFSFGTTRLIKHPC\nKKNIALYLGRQIFLTRDNFESSLLPCSIPTSMQVGIPEVTSAHFAGSVLLLVVNRKVYVY\nDYEANSWNASTGIEHPVSHISGDNCCYSENSFCMDISNSVFAYLHGAQISQTNIYFSNTR\nGYRFQKFAHERQAELVGSLGGVFYFHSLSQVGLLLIDQRKAMFSYSDHPLNRSFGLPFDY\nNGTLDILIAPGQKGILIFWFEKSLLVSRNAGQLVDPVRVREGQHILYPSIFDANITIHSI\nAANENELAVLTRESNLYYGSLGILSSSLIKFADQDIWSEEAVLVFTDVGLLEILTPLPDS\nTFPAFDFQKCPMNIQEILMDPQLHIDVCKVKLLQGEFANKMYTIDMNSKLELTALMIPRP\nGTSPVPLVMVSNPHSLGLQAVIYEDGYTYDGNTKHRLNISLRQQHHWGRADPNFTSSIKR\nSTISTITLDIANKEISCVDLKPLGGTHDFLVPHGSGSFSPIFVAHSEISACYNGILDPVA\nLQDNYSYVIEREAYDPNFRGQEASEDLKVHYQYEKLGCPLLAYYDTPWKPVVELWREGTF\nQEVVEAEYVLLEVNGLFTYTYSLTADTALCNSQPQNWTSIAEMAGDQGLFAWDRETYVSC\nHDPDNEAPLTWPKVPYQILGGPTDNKVIFDQRNGIYIFFISIVDPYYSYCHLEATFSVYV\nYGAFPLSIIPAELTIVLLTVATLLSVWLAYMIPKQLHTEQGLRLKDFWVHLYRRCRKFCA\nCFQGRWRGGAETS\n\n\n</pre>"
    },
    "readme": "Name\n   - Pig Protein Canonical sequences (UniProtKB)\n\nVersion\n   - v-2.8.1\n\nModified on\n   - 2024-06-03T20:31:01.317Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Pig Protein Canonical (UniProtKB) Sequences dataset contains Sus scrofa [taxid:9823] canonical protein fasta sequences from the UniProtKB database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - protein sequence\n   - fasta\n   - UniProtKB canonical accessions\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB fasta sequence for all pig canonical accessions data from the triplestore containing triples from nt file and extracts it into a dataset as fasta format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-sus-scrofa.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2025_01_17/uniprot-proteome-sus-scrofa.nt\n   Output Subdomain\n      Name: pig_protein_canonicalsequences.fasta\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/pig_protein_canonicalsequences.fasta\n      Name: pig_protein_canonicalsequences.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/pig_protein_canonicalsequences.stat.csv\n\nFields\n      Name: \"sequence\"\n     Description: \"Amino acid sequence\"\n      Unique Values: \"22833\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/pig_protein_canonicalsequences.fasta"
}