{
    "bcoid": "GLY_000802",
    "title": "Yeast Proteoform Glycosylation Citations (UniProtKB)",
    "description": "The Yeast Proteoform Glycosylation Citations (UniProtKB) dataset contains Saccharomyces cerevisiae S288C ...",
    "filename_list": "yeast_proteoform_citations_glycosylation_sites_uniprotkb.csv",
    "filename": "yeast_proteoform_citations_glycosylation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Saccharomyces cerevisiae S288C"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations UniProtKB"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P36081-1...",
                "Mapping the ..."
            ],
            [
                "P38993-1...",
                "The copper-i..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                }
            ],
            [
                "P36081-1",
                "Mapping the O-Mannose Glycoproteome in Saccharomyces cerevisiae.",
                "Molecular & cellular proteomics : MCP",
                "2016-04",
                "Neubert Patrick, Halim Adnan, Zauser Martin, Essig Andreas, Joshi Hiren J, Zatorska Ewa, Larsen Ida Signe Bohse, Loibl Martin, Castells-Ballester Joan, Aebi Markus, Clausen Henrik, Strahl Sabine",
                "protein_xref_pubmed",
                "26764011",
                "protein_xref_uniprotkb_gly",
                "P36081",
                ""
            ],
            [
                "P38993-1",
                "The copper-iron connection in biology: structure of the metallo-oxidase Fet3p.",
                "Proceedings of the National Academy of Sciences of the United States of America",
                "2005-10-25",
                "Taylor Alexander B, Stoj Christopher S, Ziegler Lynn, Kosman Daniel J, Hart P John",
                "protein_xref_pubmed",
                "16230618",
                "protein_xref_uniprotkb_gly",
                "P38993",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Yeast Proteoform Glycosylation Citations (UniProtKB)\n\nVersion\n   - v-2.8.1\n\nCreated on\n  - 2022-09-02T10:55:15.390409\n\nModified on\n   - 2024-05-17T11:24:13.833Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Yeast Proteoform Glycosylation Citations (UniProtKB) dataset contains Saccharomyces cerevisiae S288C [taxid:559292] citation details of the publications present in the dataset Yeast Glycosylation Sites (UniProtKB) (https://data.glygen.org/GLY_000808).\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n   - Glycosylation\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset. \n\nExecution Domain\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: yeast_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/yeast_proteoform_glycosylation_sites_uniprotkb.csv\n   Output Subdomain\n      Name: yeast_proteoform_citations_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/yeast_proteoform_citations_glycosylation_sites_uniprotkb.csv\n      Name: yeast_proteoform_citations_glycosylation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/yeast_proteoform_citations_glycosylation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"29\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"33\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"22\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"33\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"33\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"33\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"29\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/yeast_proteoform_citations_glycosylation_sites_uniprotkb.csv"
}