{ "bcoid": "GLY_000756", "title": "Yeast Glycosyltransferases", "description": "The Yeast Glycosyltransferases dataset contains a list of Saccharomyces cerevisiae S288C [taxid:559292] ...", "filename_list": "yeast_protein_glycosyltransferase.csv", "filename": "yeast_protein_glycosyltransferase.csv", "filetype": "csv", "categories": { "species": [ "Saccharomyces cerevisiae S288C" ], "molecule": [ "Protein" ], "tag": [ "Glycosyltransferases" ], "file_type": [ "csv" ], "status": [ "Reviewed" ], "scope": [ "internal" ] }, "minitable": { "content": [ [ "P14020-1...", "Saccharomyce..." ], [ "P16661-1...", "Saccharomyce..." ] ], "headers": [ "uniprotkb_ca...", "species..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "species" }, { "type": "string", "label": "status" }, { "type": "string", "label": "gene_symbol" }, { "type": "string", "label": "uniprotkb_protein_name" }, { "type": "string", "label": "ec_number" }, { "type": "string", "label": "brenda_ec_number" }, { "type": "string", "label": "cazy_gt_family" }, { "type": "string", "label": "interpro_id" }, { "type": "string", "label": "pfam_ac" }, { "type": "string", "label": "go_molecular_function" } ], [ "P14020-1", "Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)", "reviewed", "DPM1", "Dolichol-phosphate mannosyltransferase (EC 2.4.1.83) (Dolichol-phosphate mannose synthase) (DPM synthase) (Dolichyl-phosphate beta-D-mannosyltransferase) (Mannose-P-dolichol synthase) (MPD synthase)", "2.4.1.83", "2.4.1.83", "GT2", "IPR039528|IPR001173|IPR029044", "PF00535", "dolichyl-phosphate beta-D-mannosyltransferase activity [GO:0004582]| metal ion binding [GO:0046872]" ], [ "P16661-1", "Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)", "reviewed", "ALG1", "Chitobiosyldiphosphodolichol beta-mannosyltransferase (EC 2.4.1.142) (Asparagine-linked glycosylation protein 1) (Beta-1,4-mannosyltransferase) (GDP-Man:GlcNAc2-PP-dolichol mannosyltransferase) (GDP-mannose-dolichol diphosphochitobiose mannosyltransferase)", "2.4.1.142", "2.4.1.142", "GT33", "IPR026051|IPR001296", "PF00534", "beta-1,4-mannosyltransferase activity [GO:0019187]| chitobiosyldiphosphodolichol beta-mannosyltransferase activity [GO:0004578]| mannosyltransferase activity [GO:0000030]" ] ] }, "readme": "Name\n - Yeast Glycosyltransferases\n\nVersion\n - v-2.8.1\n\nCreated on\n - 2022-09-06T11:20:50.205601\n\nModified on\n - 2025-03-04T16:34:02.798Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n - Jeet Vora [jeetvora@gwu.edu]\n\nChecksum\n - \n\nUsability Domain\n - The Yeast Glycosyltransferases dataset contains a list of Saccharomyces cerevisiae S288C [taxid:559292] Glycosyltransferases derived from UniProtKB database using advanced search and other databases including CAZy, InterPro and Pfam.If you use this dataset please provide proper attribution to UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - GT\n - gycosyltransferase\n - CAZy\n\n Pipeline Steps\n - Step-1: The script maps and replaces the UniProtKB accession to the UniProtKB canonical accession\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: yeast_protein_glycosyltransferase.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/compiled/yeast_protein_glycosyltransferase.csv\n Name: yeast_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/yeast_protein_masterlist.csv\n Output Subdomain\n Name: yeast_protein_glycosyltransferase.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/yeast_protein_glycosyltransferase.csv\n Name: yeast_protein_glycosyltransferase.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/yeast_protein_glycosyltransferase.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"68\"\n Name: \"species\"\n Description: \"Species of the protein.\"\n Unique Values: \"1\"\n Name: \"status\"\n Description: \"Status of the protein record in UniProtKB database that can be reviewed for UniProtKB/Swiss-Prot entry or unreviewed for UniProtKB/TrEMBL entry\"\n Unique Values: \"1\"\n Name: \"gene_symbol\"\n Description: \"\"Official gene name/symbol assigned to the gene. Human gene names/symbols are approved by the HUGO Gene Nomenclature Committee (HGNC)\"\n Unique Values: \"68\"\n Name: \"uniprotkb_protein_name\"\n Description: \"Name of the protein in UniProtKB database\"\n Unique Values: \"68\"\n Name: \"ec_number\"\n Description: \"Enzyme Commision number assigned to an enzyme by Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n Unique Values: \"28\"\n Name: \"brenda_ec_number\"\n Description: \"Enzyme Commission (EC) number assigned to enzyme in BRENDA database\"\n Unique Values: \"21\"\n Name: \"cazy_gt_family\"\n Description: \"The Family assigned to glycosyltransferase in the CAZy (Carbohydrate-Active enZYmes) database\"\n Unique Values: \"23\"\n Name: \"interpro_id\"\n Description: \"InterPro Identifier\"\n Unique Values: \"36\"\n Name: \"pfam_ac\"\n Description: \"Accession assigned to the protein family in the Pfam database\"\n Unique Values: \"35\"\n Name: \"go_molecular_function\"\n Description: \"\"The elemental activities of a gene product at the molecular level\"\n Unique Values: \"38\"", "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/yeast_protein_glycosyltransferase.csv" }