{
    "bcoid": "GLY_000721",
    "title": "Human Somatic Mutation Citations",
    "description": "The Human Somatic Mutation Citations contains details of the publication present in the dataset Human ...",
    "filename_list": "human_protein_citations_mutation_somatic.csv",
    "filename": "human_protein_citations_mutation_somatic.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Somatic Mutation Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q9Y6N7-1...",
                "Targeted gen..."
            ],
            [
                "O43734-1...",
                "CIKS/Act1-me..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "Q9Y6N7-1",
                "Targeted gene sequencing and whole-exome sequencing in autopsied fetuses with prenatally diagnosed kidney anomalies.",
                "Clinical genetics",
                "2018 Apr",
                "Rasmussen M, Sunde L, Nielsen ML, Ramsing M, Petersen A, Hjortshoj TD, Olsen TE, Tabor A, Hertz JM, Johnsen I, Sperling L, Petersen OB, Jensen UB, Moller FG, Petersen MB, Lildballe DL",
                "protein_xref_pubmed",
                "29194579",
                "protein_xref_dbsnp",
                "rs2082671645"
            ],
            [
                "O43734-1",
                "CIKS/Act1-mediated signaling by IL-17 cytokines in context: implications for how a CIKS gene variant may predispose to psoriasis.",
                "Journal of immunology (Baltimore, Md. : 1950)",
                "2012 Jun 15",
                "Sonder SU, Paun A, Ha HL, Johnson PF, Siebenlist U",
                "protein_xref_pubmed",
                "22581863",
                "protein_xref_dbsnp",
                "rs33980500"
            ]
        ]
    },
    "readme": "Name\n   - Human Somatic Mutation Citations\n\nVersion\n   - v-2.8.1\n\nCreated on\n  - \n\nModified on\n   - 2024-05-17T11:24:10.644Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Human Somatic Mutation Citations contains details of the publication present in the dataset Human Somatic Mutation https://data.glygen.org/GLY_000462.\n\nDescription Domain\n   Keywords\n   - Somatic\n   - Mutation\n   - Publications\n   - Citations\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: human_protein_mutation_somatic.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/human_protein_mutation_somatic.csv\n   Output Subdomain\n      Name: human_protein_citations_mutation_somatic.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/human_protein_citations_mutation_somatic.csv\n      Name: human_protein_citations_mutation_somatic.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/human_protein_citations_mutation_somatic.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"56\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"150\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"59\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"138\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"150\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"150\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"63\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/human_protein_citations_mutation_somatic.csv"
}