{
    "bcoid": "GLY_000677",
    "title": "Fruitfly Proteoform Glycosylation Citations (UniProtKB)",
    "description": "The Fruitfly Proteoform Glycosylation Citations (UniProtKB) dataset contains Drosophila melanogaster ...",
    "filename_list": "fruitfly_proteoform_citations_glycosylation_sites_uniprotkb.csv",
    "filename": "fruitfly_proteoform_citations_glycosylation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Drosophila melanogaster"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations UniProtKB"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P08953-1...",
                "Structure of..."
            ],
            [
                "Q9VB68-1...",
                "Structure-fu..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                }
            ],
            [
                "P08953-1",
                "Structure of the Toll-Spatzle complex, a molecular hub in Drosophila development and innate immunity.",
                "Proceedings of the National Academy of Sciences of the United States of America",
                "2014 Apr 29",
                "Parthier C, Stelter M, Ursel C, Fandrich U, Lilie H, Breithaupt C, Stubbs MT",
                "protein_xref_pubmed",
                "24733933",
                "protein_xref_uniprotkb_gly",
                "P08953",
                ""
            ],
            [
                "Q9VB68-1",
                "Structure-function analysis of grass clip serine protease involved in Drosophila Toll pathway activation.",
                "The Journal of biological chemistry",
                "2011 Apr 8",
                "Kellenberger C, Leone P, Coquet L, Jouenne T, Reichhart JM, Roussel A",
                "protein_xref_pubmed",
                "21310954",
                "protein_xref_uniprotkb_gly",
                "Q9VB68",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Fruitfly Proteoform Glycosylation Citations (UniProtKB)\n\nVersion\n   - v-2.8.1\n\nCreated on\n  - 2022-09-02T10:55:15.390409\n\nModified on\n   - 2024-05-17T11:24:09.016Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Fruitfly Proteoform Glycosylation Citations (UniProtKB) dataset contains Drosophila melanogaster [taxid:7227] citation details of the publications present in the dataset Fruitfly Glycosylation Sites (UniProtKB) (https://data.glygen.org/GLY_000681).\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n   - Glycosylation\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset. \n\nExecution Domain\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: fruitfly_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/fruitfly_proteoform_glycosylation_sites_uniprotkb.csv\n   Output Subdomain\n      Name: fruitfly_proteoform_citations_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/fruitfly_proteoform_citations_glycosylation_sites_uniprotkb.csv\n      Name: fruitfly_proteoform_citations_glycosylation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/fruitfly_proteoform_citations_glycosylation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"76\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"35\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"20\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"34\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"35\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"35\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"76\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/fruitfly_proteoform_citations_glycosylation_sites_uniprotkb.csv"
}