{
    "bcoid": "GLY_000608",
    "title": "Mouse Proteoform Phosphorylation Citations (UniProtKB)",
    "description": "The Mouse Proteoform Phosphorylation Citations (UniProtKB) dataset contains Mus musculus [taxid:10090] ...",
    "filename_list": "mouse_proteoform_citations_phosphorylation_sites_uniprotkb.csv",
    "filename": "mouse_proteoform_citations_phosphorylation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Mus musculus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Phosphorylation Citations UniProtKB"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q8VBU8-1...",
                "SMAR1-derive..."
            ],
            [
                "P05532-1...",
                "Quantitative..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "Q8VBU8-1",
                "SMAR1-derived P44 peptide retains its tumor suppressor function through modulation of p53.",
                "The Journal of biological chemistry",
                "2007 Mar 30",
                "Jalota-Badhwar A, Kaul-Ghanekar R, Mogare D, Boppana R, Paknikar KM, Chattopadhyay S",
                "protein_xref_pubmed",
                "17229733",
                "protein_xref_uniprotkb",
                "Q8VBU8"
            ],
            [
                "P05532-1",
                "Quantitative time-resolved phosphoproteomic analysis of mast cell signaling.",
                "Journal of immunology (Baltimore, Md. : 1950)",
                "2007 Nov 1",
                "Cao L, Yu K, Banh C, Nguyen V, Ritz A, Raphael BJ, Kawakami Y, Kawakami T, Salomon AR",
                "protein_xref_pubmed",
                "17947660",
                "protein_xref_uniprotkb",
                "P05532"
            ]
        ]
    },
    "readme": "Name\n   - Mouse Proteoform Phosphorylation Citations (UniProtKB)\n\nVersion\n   - v-2.8.1\n\nCreated on\n  - 2021-10-15T08:01:56.010001\n\nModified on\n   - 2024-12-10T21:36:42.185Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse Proteoform Phosphorylation Citations (UniProtKB) dataset contains Mus musculus [taxid:10090] publication information of phosphorylated glycoproteins from UniProtKB. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniProtKB.\n\nDescription Domain\n   Keywords\n   - publications\n   - PMID\n   - journal\n   - citations\n   - authors\n   - UniProtKB\n   - PubMed\n   - Phosphorylation\n\nExecution Domain\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: mouse_proteoform_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/mouse_proteoform_phosphorylation_sites_uniprotkb.csv\n   Output Subdomain\n      Name: mouse_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/mouse_proteoform_citations_phosphorylation_sites_uniprotkb.csv\n      Name: mouse_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/mouse_proteoform_citations_phosphorylation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"4374\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"324\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"95\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"304\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"324\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"324\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"4374\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/mouse_proteoform_citations_phosphorylation_sites_uniprotkb.csv"
}