{
    "bcoid": "GLY_000567",
    "title": "Human Proteoform Phosphorylation Citations (iPTMnet)",
    "description": "The Human Proteoform Citations (iPTMNet) contains Homo sapiens [taxid:9606] publication information of ...",
    "filename_list": "human_proteoform_citations_phosphorylation_sites_iptmnet.csv",
    "filename": "human_proteoform_citations_phosphorylation_sites_iptmnet.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Phosphorylation Citations (iPTMnet)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q9NYM9-1...",
                "TiO(2)-based..."
            ],
            [
                "Q9NYM9-1...",
                "A quantitati..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "Q9NYM9-1",
                "TiO(2)-based phosphoproteomic analysis of the plasma membrane and the effects of phosphatase inhibitor treatment.",
                "Journal of proteome research",
                "2008 Aug",
                "Thingholm TE, Larsen MR, Ingrell CR, Kassem M, Jensen ON",
                "protein_xref_pubmed",
                "18578522",
                "protein_xref_iptmnet",
                "A0A0C4DH16"
            ],
            [
                "Q9NYM9-1",
                "A quantitative atlas of mitotic phosphorylation.",
                "Proceedings of the National Academy of Sciences of the United States of America",
                "2008 Aug 5",
                "Dephoure N, Zhou C, Villen J, Beausoleil SA, Bakalarski CE, Elledge SJ, Gygi SP",
                "protein_xref_pubmed",
                "18669648",
                "protein_xref_iptmnet",
                "A0A0C4DH16"
            ]
        ]
    },
    "readme": "Name\n   - Human Proteoform Phosphorylation Citations (iPTMnet)\n\nVersion\n   - v-2.8.1\n\nCreated on\n  - 2021-06-03T17:29:17.656153\n\nModified on\n   - 2024-12-05T19:29:39.732Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Human Proteoform Citations (iPTMNet) contains Homo sapiens [taxid:9606] publication information of phosphorylated proteins from iPTMnet. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from iPTMnet. If you use this dataset please provide proper attribution to iPTMnet and GlyGen.\n\nExecution Domain\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: human_proteoform_phosphorylation_sites_iptmnet.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/human_proteoform_phosphorylation_sites_iptmnet.csv\n   Output Subdomain\n      Name: human_proteoform_citations_phosphorylation_sites_iptmnet.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/human_proteoform_citations_phosphorylation_sites_iptmnet.csv\n      Name: human_proteoform_citations_phosphorylation_sites_iptmnet.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/human_proteoform_citations_phosphorylation_sites_iptmnet.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"9920\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"26595\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"1482\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"7728\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"26455\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"26607\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"13324\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/human_proteoform_citations_phosphorylation_sites_iptmnet.csv"
}