{
    "bcoid": "GLY_000555",
    "title": "UniProtKB ProtVista Mapping",
    "description": "The file includes glycan annotation (GlyTouCan ac and ChEBI Id) for the protein + site included in UniProtKB(https://uniprot.org/) ...",
    "filename_list": "protein_glygen_uniprotkb_protvista_mapping.tsv",
    "filename": "protein_glygen_uniprotkb_protvista_mapping.tsv",
    "filetype": "tsv",
    "categories": {
        "molecule": [
            "Protein"
        ],
        "tag": [
            "glycan"
        ],
        "file_type": [
            "tsv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Homo sapiens",
            "Mus musculus",
            "Rattus norvegicus",
            "Severe acute respiratory syndrome coronavirus 2",
            "Severe acute respiratory syndrome-related coronavirus"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q7Z589...",
                "Q7Z589-1..."
            ],
            [
                "Q7Z589...",
                "Q7Z589-1..."
            ]
        ],
        "headers": [
            "uniprotkb_ac...",
            "uniprotkb_ca..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_ac"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "glycosylation_site_uniprotkb"
                },
                {
                    "type": "string",
                    "label": "amino_acid"
                },
                {
                    "type": "string",
                    "label": "saccharide"
                },
                {
                    "type": "string",
                    "label": "glycosylation_type"
                },
                {
                    "type": "string",
                    "label": "chebi_id"
                },
                {
                    "type": "string",
                    "label": "tax_id"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                }
            ],
            [
                "Q7Z589",
                "Q7Z589-1",
                "236",
                "Ser",
                "G49108TO",
                "O-linked",
                "28009",
                "9606",
                "protein_xref_pubmed",
                "20068230",
                "protein_xref_glyconnect",
                "1657"
            ],
            [
                "Q7Z589",
                "Q7Z589-1",
                "236",
                "Ser",
                "G49108TO",
                "O-linked",
                "28009",
                "9606",
                "protein_xref_pubmed",
                "20068230",
                "protein_xref_uniprotkb_gly",
                "Q7Z589"
            ]
        ]
    },
    "readme": "Name\n   - UniProtKB ProtVista Mapping\n\nVersion\n   - v-2.8.1\n\nCreated on\n  - 2021-02-26T12:11:00.289136\n\nModified on\n   - 2024-05-17T11:24:04.501Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Not Applicable []\n\nChecksum\n   - \n\nUsability Domain\n   - The file includes glycan annotation (GlyTouCan ac and ChEBI Id) for the protein + site included in UniProtKB(https://uniprot.org/) database. \n\nDescription Domain\n   Keywords\n   - UniProtKB\n   - Glycans\n   - ChEBI ID\n   - ProtVista\n\n   Pipeline Steps\n   - Step-1: Glycosylation annotation from input files were combined together. The glytoucan_ac was mapped to chebi_id using another input file. Additionally, two new columns uniprot_ac and tax_id were added in the output file. The following filtering rules wer applied: 1) Only those protein + site were inlcuded which are present in UniProtKB database 2) Only those rows were included where a valid ChEBI ID was present. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: arabidopsis_proteoform_glycosylation_sites_glyconnect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/arabidopsis_proteoform_glycosylation_sites_glyconnect.csv\n      Name: arabidopsis_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/arabidopsis_proteoform_glycosylation_sites_uniprotkb.csv\n      Name: bovine_proteoform_glycosylation_sites_glyconnect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/bovine_proteoform_glycosylation_sites_glyconnect.csv\n      Name: bovine_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/bovine_proteoform_glycosylation_sites_uniprotkb.csv\n      Name: chicken_proteoform_glycosylation_sites_glyconnect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/chicken_proteoform_glycosylation_sites_glyconnect.csv\n      Name: chicken_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/chicken_proteoform_glycosylation_sites_uniprotkb.csv\n      Name: dicty_proteoform_glycosylation_sites_glyconnect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/dicty_proteoform_glycosylation_sites_glyconnect.csv\n      Name: dicty_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/dicty_proteoform_glycosylation_sites_uniprotkb.csv\n      Name: fruitfly_proteoform_glycosylation_sites_glyconnect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/fruitfly_proteoform_glycosylation_sites_glyconnect.csv\n      Name: fruitfly_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/fruitfly_proteoform_glycosylation_sites_uniprotkb.csv\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/glycan_masterlist.csv\n      Name: glycan_xref_chebi.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/glycan_xref_chebi.csv\n      Name: hamster_proteoform_glycosylation_sites_glyconnect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/hamster_proteoform_glycosylation_sites_glyconnect.csv\n      Name: hamster_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/hamster_proteoform_glycosylation_sites_uniprotkb.csv\n      Name: hcv1a_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/hcv1a_proteoform_glycosylation_sites_uniprotkb.csv\n      Name: hcv1b_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/hcv1b_proteoform_glycosylation_sites_uniprotkb.csv\n      Name: human_proteoform_glycosylation_sites_glyconnect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/human_proteoform_glycosylation_sites_glyconnect.csv\n      Name: human_proteoform_glycosylation_sites_gptwiki.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/human_proteoform_glycosylation_sites_gptwiki.csv\n      Name: human_proteoform_glycosylation_sites_harvard.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/human_proteoform_glycosylation_sites_harvard.csv\n      Name: human_proteoform_glycosylation_sites_unicarbkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/human_proteoform_glycosylation_sites_unicarbkb.csv\n      Name: human_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/human_proteoform_glycosylation_sites_uniprotkb.csv\n      Name: mouse_proteoform_glycosylation_sites_glyconnect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/mouse_proteoform_glycosylation_sites_glyconnect.csv\n      Name: mouse_proteoform_glycosylation_sites_unicarbkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/mouse_proteoform_glycosylation_sites_unicarbkb.csv\n      Name: mouse_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/mouse_proteoform_glycosylation_sites_uniprotkb.csv\n      Name: pig_proteoform_glycosylation_sites_glyconnect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/pig_proteoform_glycosylation_sites_glyconnect.csv\n      Name: pig_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/pig_proteoform_glycosylation_sites_uniprotkb.csv\n      Name: rat_proteoform_glycosylation_sites_glyconnect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/rat_proteoform_glycosylation_sites_glyconnect.csv\n      Name: rat_proteoform_glycosylation_sites_unicarbkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/rat_proteoform_glycosylation_sites_unicarbkb.csv\n      Name: rat_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/rat_proteoform_glycosylation_sites_uniprotkb.csv\n      Name: sarscov1_proteoform_glycosylation_sites_unicarbkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/sarscov1_proteoform_glycosylation_sites_unicarbkb.csv\n      Name: sarscov1_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/sarscov1_proteoform_glycosylation_sites_uniprotkb.csv\n      Name: sarscov2_proteoform_glycosylation_sites_glyconnect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/sarscov2_proteoform_glycosylation_sites_glyconnect.csv\n      Name: sarscov2_proteoform_glycosylation_sites_unicarbkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/sarscov2_proteoform_glycosylation_sites_unicarbkb.csv\n      Name: sarscov2_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/sarscov2_proteoform_glycosylation_sites_uniprotkb.csv\n      Name: yeast_proteoform_glycosylation_sites_glyconnect.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/yeast_proteoform_glycosylation_sites_glyconnect.csv\n      Name: yeast_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/yeast_proteoform_glycosylation_sites_uniprotkb.csv\n      Name: zebrafish_proteoform_glycosylation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/zebrafish_proteoform_glycosylation_sites_uniprotkb.csv\n   Output Subdomain\n      Name: protein_glygen_uniprotkb_protvista_mapping.tsv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/protein_glygen_uniprotkb_protvista_mapping.tsv\n      Name: protein_glygen_uniprotkb_protvista_mapping.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/protein_glygen_uniprotkb_protvista_mapping.stat.csv\n\nFields\n      Name: \"uniprotkb_ac\"\n     Description: \"Accession assigned to the protein in the UniProtKB database\"\n      Unique Values: \"1439\"\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"1439\"\n      Name: \"glycosylation_site_uniprotkb\"\n     Description: \"Site on the protein sequence of the UniProtKB entry where glycosylation is observed\"\n      Unique Values: \"1081\"\n      Name: \"amino_acid\"\n     Description: \"Three letter abbreviation code of the amino acid\"\n      Unique Values: \"3\"\n      Name: \"saccharide\"\n     Description: \"Sugar\"\n      Unique Values: \"384\"\n      Name: \"glycosylation_type\"\n     Description: \"Type of glycosylation (N/O/C/S linked glycosylation)\"\n      Unique Values: \"3\"\n      Name: \"chebi_id\"\n     Description: \"Entity identifier from ChEBI  database \"\n      Unique Values: \"384\"\n      Name: \"tax_id\"\n     Description: \"NCBI Taxonomy database Identifier\"\n      Unique Values: \"8\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"7\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"1064\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"5\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"2168\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/protein_glygen_uniprotkb_protvista_mapping.tsv"
}