{
    "bcoid": "GLY_000516",
    "title": "Human Proteoform Citations (Literature Mining)",
    "description": "The Human Proteoform Citations [Automatic Literature Mining] dataset contains Homo sapiens [taxid:9606] ...",
    "filename_list": "human_proteoform_citations_glycosylation_sites_literature_mining.csv",
    "filename": "human_proteoform_citations_glycosylation_sites_literature_mining.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P35575-1...",
                "Asparagine-l..."
            ],
            [
                "P07288-1...",
                "Human prosta..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                }
            ],
            [
                "P35575-1",
                "Asparagine-linked oligosaccharides are localized to a luminal hydrophilic loop in human glucose-6-phosphatase.",
                "The Journal of biological chemistry",
                "1998 Aug 21",
                "Pan CJ, Lei KJ, Chou JY",
                "protein_xref_pubmed",
                "9705299",
                "protein_xref_glygen_ds",
                "GLY_000481",
                ""
            ],
            [
                "P07288-1",
                "Human prostate-specific antigen: structural and functional similarity with serine proteases.",
                "Proceedings of the National Academy of Sciences of the United States of America",
                "1986 May",
                "Watt KW, Lee PJ, M'Timkulu T, Chan WP, Loor R",
                "protein_xref_pubmed",
                "2422647",
                "protein_xref_glygen_ds",
                "GLY_000481",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Human Proteoform Citations (Literature Mining)\n\nVersion\n   - v-2.8.1\n\nCreated on\n  - 2020-06-26T15:29:27.375356\n\nModified on\n   - 2025-04-15T14:23:00.332Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Human Proteoform Citations [Automatic Literature Mining] dataset contains Homo sapiens [taxid:9606] citation details of the publications present in the Human Glycosylation Sites [Automatic Literature Mining] [Automatically verified] dataset (https://data.glygen.org/GLY_000481).\n\nDescription Domain\n   Keywords\n   - PMID\n   - journal\n   - citations\n   - authors\n   - Literature\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: human_proteoform_glycosylation_sites_literature_mining.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/human_proteoform_glycosylation_sites_literature_mining.csv\n   Output Subdomain\n      Name: human_proteoform_citations_glycosylation_sites_literature_mining.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/human_proteoform_citations_glycosylation_sites_literature_mining.csv\n      Name: human_proteoform_citations_glycosylation_sites_literature_mining.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/human_proteoform_citations_glycosylation_sites_literature_mining.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"592\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"831\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"288\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"712\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"829\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"832\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"1\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/human_proteoform_citations_glycosylation_sites_literature_mining.csv"
}