{
    "bcoid": "GLY_000362",
    "title": "HCV1b Gene Ontology (GO)",
    "description": "The Hepatitis C virus (genotype 1b, isolate Japanese) Gene Ontology (GO) dataset contains Hepatitis C ...",
    "filename_list": "hcv1b_protein_go_annotation.csv",
    "filename": "hcv1b_protein_go_annotation.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Hepatitis c virus (isolate japanese)"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Gene Ontology (Go)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P26662-1...",
                "..."
            ],
            [
                "P26662-1...",
                "..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "gene_symbol..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "gene_symbol"
                },
                {
                    "type": "string",
                    "label": "go_term_id"
                },
                {
                    "type": "string",
                    "label": "go_term_label"
                },
                {
                    "type": "string",
                    "label": "go_term_category"
                },
                {
                    "type": "string",
                    "label": "eco_id"
                },
                {
                    "type": "string",
                    "label": "pmid"
                }
            ],
            [
                "P26662-1",
                "",
                "GO_0019049",
                "virus-mediated perturbation of host defense response",
                "biological_process",
                "",
                ""
            ],
            [
                "P26662-1",
                "",
                "GO_0042025",
                "host cell nucleus",
                "cellular_component",
                "",
                ""
            ]
        ]
    },
    "readme": "Name\n   - HCV1b Gene Ontology (GO)\n\nVersion\n   - v-2.8.1\n\nCreated on\n  - 2020-03-14T15:19:44.880963\n\nModified on\n   - 2024-05-17T11:23:57.710Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Hepatitis C virus (genotype 1b, isolate Japanese) Gene Ontology (GO) dataset contains Hepatitis C virus (isolate Japanese) [taxid:11116] Gene Ontology Id and name, categories and evidence information for UniProtKB canonical accessions. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - go id\n   - go name\n   - molecular function\n   - biological process\n   - cellular component\n   - Gene Ontology (GO)\n\n   Pipeline Steps\n   - Step-1: The script extracts the GO Id, name, category and evidence from the triplestore of NT file and maps it to the UniProtKB canonical sequences.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-hepatitis-c-virus-1b.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2025_01_17/uniprot-proteome-hepatitis-c-virus-1b.nt\n   Output Subdomain\n      Name: hcv1b_protein_go_annotation.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/hcv1b_protein_go_annotation.csv\n      Name: hcv1b_protein_go_annotation.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/hcv1b_protein_go_annotation.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"gene_symbol\"\n     Description: \"\"Official gene name/symbol assigned to the gene. Human gene names/symbols are approved by the HUGO Gene Nomenclature Committee (HGNC)\"\n      Unique Values: \"1\"\n      Name: \"go_term_id\"\n     Description: \"The Gene Ontology (GO) term unique alphanumeric identifier\"\n      Unique Values: \"42\"\n      Name: \"go_term_label\"\n     Description: \"The Gene Ontology (GO) name that is a word or string of words\"\n      Unique Values: \"42\"\n      Name: \"go_term_category\"\n     Description: \"\"The Gene Ontology (GO) domain to which the term belongs. There are three ontology domain in GO - cellular component\"\n      Unique Values: \"3\"\n      Name: \"eco_id\"\n     Description: \"Evidence & Conclusion Ontology (ECO) identifier\"\n      Unique Values: \"1\"\n      Name: \"pmid\"\n     Description: \"NCBI PubMed database Identifier\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/hcv1b_protein_go_annotation.csv"
}