{
    "bcoid": "GLY_000305",
    "title": "Glycan Xref PubChem",
    "description": "The dataset provides cross-references to PubChem compound (CID) and substance (SID) for the associated ...",
    "filename_list": "glycan_xref_pubchem.csv",
    "filename": "glycan_xref_pubchem.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Glycan"
        ],
        "tag": [
            "PubChem"
        ],
        "status": [
            "Reviewed"
        ],
        "file_type": [
            "csv"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Saccharomyces cerevisiae",
            "Homo sapiens",
            "Mus musculus",
            "Rattus",
            "Rattus norvegicus",
            "Drosophila melanogaster",
            "Sus scrofa domesticus",
            "Severe acute respiratory syndrome coronavirus 2",
            "Sus scrofa",
            "Dictyostelium discoideum"
        ]
    },
    "minitable": {
        "content": [
            [
                "G00002CF...",
                "491870160..."
            ],
            [
                "G00009BX...",
                "491838106..."
            ]
        ],
        "headers": [
            "glytoucan_ac...",
            "xref_id..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                }
            ],
            [
                "G00002CF",
                "491870160",
                "glycan_xref_pubchem_substance"
            ],
            [
                "G00009BX",
                "491838106",
                "glycan_xref_pubchem_substance"
            ]
        ]
    },
    "readme": "Name\n   - Glycan Xref PubChem\n\nVersion\n   - v-2.8.1\n\nCreated on\n  - 2019-11-14T11:47:20.058924\n\nModified on\n   - 2024-05-17T11:23:55.595Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The dataset provides cross-references to PubChem compound (CID) and substance (SID) for the associated glycan (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281). Source database: https://glytoucan.org/;http://www.glycome-db.org/; https://pubchem.ncbi.nlm.nih.gov\n\nDescription Domain\n   Keywords\n   - Glycan\n   - GlyTouCan Accession\n   - PubChem\n   - Cross-references\n   - ID/Accession Mapping\n\n   Pipeline Steps\n   - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the accession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/glycan_masterlist.csv\n      Name: pbch.tsv\n      URI: https:/data.glygen.org/ln2downloads/glytoucan/2025_02_10/export/pbch.tsv\n   Output Subdomain\n      Name: glycan_xref_pubchem.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/glycan_xref_pubchem.csv\n      Name: glycan_xref_pubchem.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/glycan_xref_pubchem.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"56304\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"71091\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"2\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/glycan_xref_pubchem.csv"
}