{ "bcoid": "GLY_000286", "title": "Glycan Monosaccharide compositions", "description": "The dataset provides the monosaccharide compositions for the associated glycans (GlyTouCan Accession). ...", "filename_list": "glycan_monosaccharide_composition.csv", "filename": "glycan_monosaccharide_composition.csv", "filetype": "csv", "categories": { "molecule": [ "Glycan" ], "tag": [ "Monosaccharide composition" ], "status": [ "Reviewed" ], "file_type": [ "csv" ], "scope": [ "internal" ], "species": [ "Sus scrofa", "Rattus", "Homo sapiens", "Mus musculus", "Saccharomyces cerevisiae", "Drosophila melanogaster", "Rattus norvegicus", "Severe acute respiratory syndrome coronavirus 2", "Sus scrofa domesticus", "Dictyostelium discoideum", "Hepatitis C virus (isolate H77)", "Severe acute respiratory syndrome-related coronavirus", "Hepacivirus C" ] }, "minitable": { "content": [ [ "G00002CF...", "2..." ], [ "G00009BX...", "2..." ] ], "headers": [ "glytoucan_ac...", "Hex..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "Hex" }, { "type": "string", "label": "HexNAc" }, { "type": "string", "label": "dHex" }, { "type": "string", "label": "NeuAc" }, { "type": "string", "label": "NeuGc" }, { "type": "string", "label": "HexA" }, { "type": "string", "label": "HexN" }, { "type": "string", "label": "S" }, { "type": "string", "label": "P" }, { "type": "string", "label": "aldi" }, { "type": "string", "label": "Xxx" }, { "type": "string", "label": "X" }, { "type": "string", "label": "Count" } ], [ "G00002CF", "2", "0", "0", "0", "2", "0", "0", "0", "0", "0", "0", "0", "4" ], [ "G00009BX", "2", "2", "1", "0", "0", "0", "0", "0", "0", "0", "0", "0", "5" ] ] }, "readme": "Name\n - Glycan Monosaccharide compositions\n\nVersion\n - v-2.8.1\n\nCreated on\n - 2019-11-13T13:36:02.199874\n\nModified on\n - 2024-05-17T11:23:55.017Z\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides the monosaccharide compositions for the associated glycans (GlyTouCan Accession). It provides the count for sugar residues such as Hexose (Hex), N-Acetylhexosamine (HexNAc), Deoxyhexose (dHex), N-Acetylneuraminic Acid ( NeuAc), N-Glycolylneuraminic Acid (NeuGc), Other (Xxx). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281). Source database: https://glytoucan.org/\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Monosaccharide Composition\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n Scripts - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/glycan_masterlist.csv\n Name: monocomp.tsv\n URI: https:/data.glygen.org/ln2downloads/glytoucan/2025_02_10/export/monocomp.tsv\n Output Subdomain\n Name: glycan_monosaccharide_composition.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/glycan_monosaccharide_composition.csv\n Name: glycan_monosaccharide_composition.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/glycan_monosaccharide_composition.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"56984\"\n Name: \"Hex\"\n Description: \"Abbreviation for Hexose monosaccharide residue\"\n Unique Values: \"34\"\n Name: \"HexNAc\"\n Description: \"Abbreviation for N-Acetylhexosamine monosaccharide residue\"\n Unique Values: \"27\"\n Name: \"dHex\"\n Description: \"Abbreviation for Deoxyhexose monosaccharide residue\"\n Unique Values: \"14\"\n Name: \"NeuAc\"\n Description: \"Abbreviation for N-Acetylneuraminic Acid monosaccharide residue\"\n Unique Values: \"10\"\n Name: \"NeuGc\"\n Description: \"Abbreviation for N-Glycolylneuraminic Acid monosaccharide residue\"\n Unique Values: \"6\"\n Name: \"HexA\"\n Description: \"Abbreviation for Hexuronic Acid monosaccharide residue\"\n Unique Values: \"10\"\n Name: \"HexN\"\n Description: \"Abbreviation for 2-Amino-2-Deoxy-Hexose monosaccharide residue\"\n Unique Values: \"8\"\n Name: \"S\"\n Description: \"Abbreviation for Sulphate\"\n Unique Values: \"22\"\n Name: \"P\"\n Description: \"Abbreviation for Phosphate\"\n Unique Values: \"5\"\n Name: \"aldi\"\n Description: \"Abbreviation for alditol\"\n Unique Values: \"2\"\n Name: \"Xxx\"\n Description: \"Denotes other monosaccharide residues \"\n Unique Values: \"9\"\n Name: \"X\"\n Description: \"\"\n Unique Values: \"4\"\n Name: \"Count\"\n Description: \"Number of monosaccharide residues in a glycan\"\n Unique Values: \"61\"", "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/glycan_monosaccharide_composition.csv" }