{
    "bcoid": "GLY_000283",
    "title": "Glycan Motif",
    "description": "The dataset provides information on the glycan motifs for the associated glycan (GlyTouCan Accession). ...",
    "filename_list": "glycan_motif.csv",
    "filename": "glycan_motif.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Glycan"
        ],
        "tag": [
            "Motif"
        ],
        "status": [
            "Reviewed"
        ],
        "file_type": [
            "csv"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Homo sapiens",
            "Mus musculus",
            "Rattus",
            "Sus scrofa",
            "Drosophila melanogaster",
            "Sus scrofa domesticus",
            "Rattus norvegicus",
            "Severe acute respiratory syndrome coronavirus 2",
            "Saccharomyces cerevisiae",
            "Hepacivirus C"
        ]
    },
    "minitable": {
        "content": [
            [
                "G00009BX...",
                "GGM.000001..."
            ],
            [
                "G00009BX...",
                "GGM.000002..."
            ]
        ],
        "headers": [
            "glytoucan_ac...",
            "motif_ac..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "motif_ac"
                },
                {
                    "type": "string",
                    "label": "motif_name"
                },
                {
                    "type": "string",
                    "label": "alignment"
                },
                {
                    "type": "string",
                    "label": "collection_name"
                },
                {
                    "type": "string",
                    "label": "collection_accession"
                },
                {
                    "type": "string",
                    "label": "alternative_name"
                },
                {
                    "type": "string",
                    "label": "aglycon"
                },
                {
                    "type": "string",
                    "label": "motif_ac_xref"
                },
                {
                    "type": "string",
                    "label": "reducing_end"
                },
                {
                    "type": "string",
                    "label": "pmid"
                },
                {
                    "type": "string",
                    "label": "keyword"
                }
            ],
            [
                "G00009BX",
                "GGM.000001",
                "Type 2 LN",
                "Substructure",
                "GGM",
                "000001",
                "N-acetyllactosamine",
                "R",
                "G00055MO",
                "false",
                "1567687; 6653876; 19756298",
                "LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2"
            ],
            [
                "G00009BX",
                "GGM.000002",
                "Type 2 LN2",
                "Substructure",
                "GGM",
                "000002",
                "i antigen",
                "R",
                "G00058MO",
                "false",
                "107170; 2551493; 19756298",
                "LacNAc; N-acetyllactosamine; N-acetyllactosamine type 2"
            ]
        ]
    },
    "readme": "Name\n   - Glycan Motif\n\nVersion\n   - v-2.8.1\n\nCreated on\n  - 2019-11-13T13:05:37.256972\n\nModified on\n   - 2024-05-17T11:23:54.903Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Nathan Edwards [nje5@georgetown.edu], Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The dataset provides information on the glycan motifs for the associated glycan (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLY_000281) and from GlycoMotif (https://glycomotif.glyomics.org/).\n\nDescription Domain\n   Keywords\n   - Glycan\n   - Motif\n   - Glycomotif\n\n   Pipeline Steps\n   - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list.The data incudes curated list of the motif accessions and other information like: motif name,reducing end,alternative name,aglycon.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-species-agnostic-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/glycan_masterlist.csv\n      Name: allmotifaligns.tsv\n      URI: https:/data.glygen.org/ln2downloads/glytoucan/2025_02_10/export/allmotifaligns.tsv\n      Name: allmotifs.tsv\n      URI: https:/data.glygen.org/ln2downloads/glytoucan/2025_02_10/export/allmotifs.tsv\n   Output Subdomain\n      Name: glycan_motif.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/glycan_motif.csv\n      Name: glycan_motif.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/glycan_motif.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"30576\"\n      Name: \"motif_ac\"\n     Description: \"Motif accession associated with the GlyTouCan accession.\"\n      Unique Values: \"121\"\n      Name: \"motif_name\"\n     Description: \"Preffered name of the motif associated with the motif_ac\"\n      Unique Values: \"120\"\n      Name: \"alignment\"\n     Description: \"\"\n      Unique Values: \"4\"\n      Name: \"collection_name\"\n     Description: \"Name of the collection of Glycan motif.\"\n      Unique Values: \"1\"\n      Name: \"collection_accession\"\n     Description: \"Accession of the motif in the collection.\"\n      Unique Values: \"121\"\n      Name: \"alternative_name\"\n     Description: \"Alternative or syonyms of the motif name or preffered name.\"\n      Unique Values: \"49\"\n      Name: \"aglycon\"\n     Description: \"specifies aglycon\"\n      Unique Values: \"5\"\n      Name: \"motif_ac_xref\"\n     Description: \" equivalent motif present in the GlyTouCan database. Identified by a GlyTouCan accession. \"\n      Unique Values: \"116\"\n      Name: \"reducing_end\"\n     Description: \"\"\n      Unique Values: \"2\"\n      Name: \"pmid\"\n     Description: \"NCBI PubMed database Identifier\"\n      Unique Values: \"101\"\n      Name: \"keyword\"\n     Description: \"\"\n      Unique Values: \"33\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/glycan_motif.csv"
}