{
    "bcoid": "GLY_000280",
    "title": "Rat Glycohydrolases",
    "description": "The Rat Glycohydrolases dataset contains a list of Rattus norvegicus [taxid:10116] glycohydrolases derived ...",
    "filename_list": "rat_protein_glycohydrolase.csv",
    "filename": "rat_protein_glycohydrolase.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Rattus norvegicus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Glycohydrolases"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P06760-1...",
                "Rattus norve..."
            ],
            [
                "P00689-1...",
                "Rattus norve..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "species..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "species"
                },
                {
                    "type": "string",
                    "label": "status"
                },
                {
                    "type": "string",
                    "label": "gene_symbol"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_protein_name"
                },
                {
                    "type": "string",
                    "label": "ec_number"
                },
                {
                    "type": "string",
                    "label": "brenda_ec_number"
                },
                {
                    "type": "string",
                    "label": "cazy_gh_family"
                },
                {
                    "type": "string",
                    "label": "interpro_id"
                },
                {
                    "type": "string",
                    "label": "pfam_ac"
                },
                {
                    "type": "string",
                    "label": "go_molecular_function"
                }
            ],
            [
                "P06760-1",
                "Rattus norvegicus (Rat)",
                "reviewed",
                "Gusb",
                "Beta-glucuronidase (EC 3.2.1.31)",
                "3.2.1.31",
                "",
                "GH2",
                "IPR036156|IPR008979|IPR006101|IPR023232|IPR006103|IPR023230|IPR006102|IPR006104|IPR017853|IPR013783",
                "PF00703|PF02836|PF02837",
                "beta-glucuronidase activity [GO:0004566]|carbohydrate binding [GO:0030246]|signaling receptor binding [GO:0005102]"
            ],
            [
                "P00689-1",
                "Rattus norvegicus (Rat)",
                "reviewed",
                "Amy2",
                "Pancreatic alpha-amylase (PA) (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase)",
                "3.2.1.1",
                "",
                "GH13",
                "IPR006048|IPR031319|IPR006046|IPR006047|IPR013780|IPR017853",
                "PF00128|PF02806",
                "alpha-amylase activity [GO:0004556]|alpha-amylase activity (releasing maltohexaose) [GO:0103025]|calcium ion binding [GO:0005509]|chloride ion binding [GO:0031404]"
            ]
        ]
    },
    "readme": "Name\n   - Rat Glycohydrolases\n\nVersion\n   - v-2.8.1\n\nCreated on\n  - 2019-09-11T17:20:18.184619\n\nModified on\n   - 2024-12-10T18:55:18.682Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Rat Glycohydrolases dataset contains a list of Rattus norvegicus [taxid:10116] glycohydrolases derived from UniProtKB database using advanced search and other databases including CAZy, InterPro and Pfam. . If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - glycohydrolase\n   - glycosidase\n   - EC Number\n   - CAZy\n\n   Pipeline Steps\n   - Step-1: The script maps and replaces the UniProtKB accession to the UniProtKB canonical accession\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: rat_protein_glycohydrolase.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/compiled/rat_protein_glycohydrolase.csv\n      Name: rat_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/rat_protein_masterlist.csv\n   Output Subdomain\n      Name: rat_protein_glycohydrolase.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/rat_protein_glycohydrolase.csv\n      Name: rat_protein_glycohydrolase.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/rat_protein_glycohydrolase.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"35\"\n      Name: \"species\"\n     Description: \"Species of the protein.\"\n      Unique Values: \"1\"\n      Name: \"status\"\n     Description: \"Status of the protein record in UniProtKB database that can be reviewed for UniProtKB/Swiss-Prot entry or unreviewed for UniProtKB/TrEMBL entry\"\n      Unique Values: \"1\"\n      Name: \"gene_symbol\"\n     Description: \"\"Official gene name/symbol assigned to the gene. Human gene names/symbols are approved by the HUGO Gene Nomenclature Committee (HGNC)\"\n      Unique Values: \"35\"\n      Name: \"uniprotkb_protein_name\"\n     Description: \"Name of the protein in UniProtKB database\"\n      Unique Values: \"35\"\n      Name: \"ec_number\"\n     Description: \"Enzyme Commision number assigned to an enzyme by Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n      Unique Values: \"23\"\n      Name: \"brenda_ec_number\"\n     Description: \"Enzyme Commission (EC) number assigned to enzyme in BRENDA database\"\n      Unique Values: \"5\"\n      Name: \"cazy_gh_family\"\n     Description: \"\"\n      Unique Values: \"19\"\n      Name: \"interpro_id\"\n     Description: \"InterPro Identifier\"\n      Unique Values: \"32\"\n      Name: \"pfam_ac\"\n     Description: \"Accession assigned to the protein family in the Pfam database\"\n      Unique Values: \"25\"\n      Name: \"go_molecular_function\"\n     Description: \"\"The elemental activities of a gene product at the molecular level\"\n      Unique Values: \"32\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/rat_protein_glycohydrolase.csv"
}