{
    "bcoid": "GLY_000279",
    "title": "Rat Glycosyltransferases",
    "description": "The Rat Glycosyltransferases dataset contains list of Rattus norvegicus [taxid:10116] glycosyltransferases ...",
    "filename_list": "rat_protein_glycosyltransferase.csv",
    "filename": "rat_protein_glycosyltransferase.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Rattus norvegicus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Glycosyltransferases"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q64550-1...",
                "Rattus norve..."
            ],
            [
                "Q9JLA3-1...",
                "Rattus norve..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "species..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "species"
                },
                {
                    "type": "string",
                    "label": "status"
                },
                {
                    "type": "string",
                    "label": "gene_symbol"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_protein_name"
                },
                {
                    "type": "string",
                    "label": "ec_number"
                },
                {
                    "type": "string",
                    "label": "brenda_ec_number"
                },
                {
                    "type": "string",
                    "label": "cazy_gt_family"
                },
                {
                    "type": "string",
                    "label": "interpro_id"
                },
                {
                    "type": "string",
                    "label": "pfam_ac"
                },
                {
                    "type": "string",
                    "label": "go_molecular_function"
                }
            ],
            [
                "Q64550-1",
                "Rattus norvegicus (Rat)",
                "reviewed",
                "Ugt1a1",
                "UDP-glucuronosyltransferase 1-1 (UDPGT 1-1) (UGT1*1) (UGT1-01) (UGT1.1) (EC 2.4.1.17) (B1) (UDP-glucuronosyltransferase 1A1)",
                "2.4.1.17",
                "2.4.1.17",
                "GT1",
                "IPR002213|IPR035595",
                "PF00201",
                "enzyme binding [GO:0019899]|enzyme inhibitor activity [GO:0004857]|glucuronosyltransferase activity [GO:0015020]|protein heterodimerization activity [GO:0046982]|protein homodimerization activity [GO:0042803]|retinoic acid binding [GO:0001972]|steroid binding [GO:0005496]|UDP-glycosyltransferase activity [GO:0008194]"
            ],
            [
                "Q9JLA3-1",
                "Rattus norvegicus (Rat)",
                "reviewed",
                "Uggt1",
                "UDP-glucose:glycoprotein glucosyltransferase 1 (UGT1) (rUGT1) (EC 2.4.1.-) (UDP--Glc:glycoprotein glucosyltransferase) (UDP-glucose ceramide glucosyltransferase-like 1)",
                "2.4.1.-",
                "",
                "GT24",
                "IPR040497|IPR029044|IPR009448|IPR040693|IPR040694|IPR040692|IPR040525",
                "PF18404|PF18400|PF18401|PF18402|PF18403|PF06427",
                "UDP-glucose:glycoprotein glucosyltransferase activity [GO:0003980]|unfolded protein binding [GO:0051082]"
            ]
        ]
    },
    "readme": "Name\n   - Rat Glycosyltransferases\n\nVersion\n   - v-2.8.1\n\nCreated on\n  - 2019-09-11T17:14:40.100826\n\nModified on\n   - 2024-12-10T18:50:49.282Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Rat Glycosyltransferases dataset contains list of Rattus norvegicus [taxid:10116] glycosyltransferases enzymes with evidence of glycosyltransferase activity defined by one or several of the following criteria: gene ontology (GO) or UniProtKB/Swiss-Prot annotation; classification by CAZY database; inclusion in the GT panel developed by the Consortium of Functional Glycomics (CFG); domains reported by InterPro and Pfam. If you use this dataset please provide proper attribution to GlyGen\n\nDescription Domain\n   Keywords\n   - GT\n   - glycosyltransferase\n   - CAZy\n   - CFG\n   - EC Number\n   - GO\n\n   Pipeline Steps\n   - Step-1: The script maps and replaces the UniProtKb accession to the UniProtKB canonical accession\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: rat_protein_glycosyltransferase.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/compiled/rat_protein_glycosyltransferase.csv\n      Name: rat_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/rat_protein_masterlist.csv\n   Output Subdomain\n      Name: rat_protein_glycosyltransferase.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/rat_protein_glycosyltransferase.csv\n      Name: rat_protein_glycosyltransferase.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/rat_protein_glycosyltransferase.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"97\"\n      Name: \"species\"\n     Description: \"Species of the protein.\"\n      Unique Values: \"1\"\n      Name: \"status\"\n     Description: \"Status of the protein record in UniProtKB database that can be reviewed for UniProtKB/Swiss-Prot entry or unreviewed for UniProtKB/TrEMBL entry\"\n      Unique Values: \"1\"\n      Name: \"gene_symbol\"\n     Description: \"\"Official gene name/symbol assigned to the gene. Human gene names/symbols are approved by the HUGO Gene Nomenclature Committee (HGNC)\"\n      Unique Values: \"97\"\n      Name: \"uniprotkb_protein_name\"\n     Description: \"Name of the protein in UniProtKB database\"\n      Unique Values: \"97\"\n      Name: \"ec_number\"\n     Description: \"Enzyme Commision number assigned to an enzyme by Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n      Unique Values: \"52\"\n      Name: \"brenda_ec_number\"\n     Description: \"Enzyme Commission (EC) number assigned to enzyme in BRENDA database\"\n      Unique Values: \"20\"\n      Name: \"cazy_gt_family\"\n     Description: \"The Family assigned to glycosyltransferase in the CAZy (Carbohydrate-Active enZYmes) database\"\n      Unique Values: \"37\"\n      Name: \"interpro_id\"\n     Description: \"InterPro Identifier\"\n      Unique Values: \"50\"\n      Name: \"pfam_ac\"\n     Description: \"Accession assigned to the protein family in the Pfam database\"\n      Unique Values: \"40\"\n      Name: \"go_molecular_function\"\n     Description: \"\"The elemental activities of a gene product at the molecular level\"\n      Unique Values: \"75\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/rat_protein_glycosyltransferase.csv"
}