{
    "bcoid": "GLY_000267",
    "title": "Rat Gene Locus (Ensembl)",
    "description": "The Rat Gene Locus (Ensembl) contains Rattus norvegicus [taxid:10116] UniProtKB canonical accessions ...",
    "filename_list": "rat_protein_genelocus.csv",
    "filename": "rat_protein_genelocus.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Rattus norvegicus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Gene Coordinates"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "D3ZB44-1...",
                "Zfp324..."
            ],
            [
                "D3ZB49-1...",
                "Osgin2..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "gene_symbol..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "gene_symbol"
                },
                {
                    "type": "string",
                    "label": "ensembl_gene_id"
                },
                {
                    "type": "string",
                    "label": "chromosome_id"
                },
                {
                    "type": "string",
                    "label": "start_pos"
                },
                {
                    "type": "string",
                    "label": "end_pos"
                },
                {
                    "type": "string",
                    "label": "strand"
                }
            ],
            [
                "D3ZB44-1",
                "Zfp324",
                "ENSRNOG00000027436",
                "1",
                "73591491",
                "73597894",
                "0"
            ],
            [
                "D3ZB49-1",
                "Osgin2",
                "ENSRNOG00000009358",
                "5",
                "29500408",
                "29520831",
                "1"
            ]
        ]
    },
    "readme": "Name\n   - Rat Gene Locus (Ensembl)\n\nVersion\n   - v-2.8.1\n\nCreated on\n  - 2019-09-06T14:06:38.993695\n\nModified on\n   - 2024-05-17T11:23:54.340Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Rat Gene Locus (Ensembl) contains Rattus norvegicus [taxid:10116] UniProtKB canonical accessions mapped to the corresponding ENSEMBL Gene ID, chromosome ID along with the gene's start and end position on the chromosome. The dataset is contributed by EMBL-EBI-UniProtKB and processed by GlyGen. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - gene coordinates\n   - start position\n   - end position\n   - Ensembl\n   - strand\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are mapped to ENSEMBL Gene identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: rat_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/rat_protein_masterlist.csv\n      Name: uniprot-proteome-rattus-norvegicus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2025_01_17/uniprot-proteome-rattus-norvegicus.nt\n   Output Subdomain\n      Name: rat_protein_genelocus.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/rat_protein_genelocus.csv\n      Name: rat_protein_genelocus.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/rat_protein_genelocus.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"18643\"\n      Name: \"gene_symbol\"\n     Description: \"\"Official gene name/symbol assigned to the gene. Human gene names/symbols are approved by the HUGO Gene Nomenclature Committee (HGNC)\"\n      Unique Values: \"18628\"\n      Name: \"ensembl_gene_id\"\n     Description: \"Gene Identifier in Ensembl database\"\n      Unique Values: \"18628\"\n      Name: \"chromosome_id\"\n     Description: \"Chromosome number identifier\"\n      Unique Values: \"28\"\n      Name: \"start_pos\"\n     Description: \"Start position of the gene on the chromosome\"\n      Unique Values: \"18616\"\n      Name: \"end_pos\"\n     Description: \"End position of the gene on the chromosome\"\n      Unique Values: \"18608\"\n      Name: \"strand\"\n     Description: \"The strand of the gene\"\n      Unique Values: \"2\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/rat_protein_genelocus.csv"
}