{
    "bcoid": "GLY_000255",
    "title": "Rat Protein Isoform sequences (UniProtKB)",
    "description": "The Rat Protein Isoform sequences (UniProtKB) dataset contains Rattus norvegicus [taxid:10116] protein ...",
    "filename_list": "rat_protein_allsequences.fasta",
    "filename": "rat_protein_allsequences.fasta",
    "filetype": "fasta",
    "categories": {
        "species": [
            "Rattus norvegicus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "All Protein Sequences"
        ],
        "file_type": [
            "fasta"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "iconfilename": "fasta_icon_all.png",
    "sampledata": {
        "type": "html",
        "data": "<pre>\n>tr|D3ZB44-1|D3ZB44_RAT Isoform 1 of Zinc finger protein 324 OS=Rattus norvegicus OX=10116 GN=Zfp324 PE=3 SV=1 CANONICAL=D3ZB44-1\nMPRSPARRAPPPLQIPMAVTWPLTDPARGLMAFEDVAVYFSQEEWMFLNAAQRALYRHVM\nLENFALVDSIGPSVSRPRVIIQLQRGEEPWVPNRTIAGPGRGTHRRSSLGSNYSARDRHV\nSGASPGATCDRPVRISTSLLPPAGAYPDAKILEGHQSACPSLQKKPTGVSVIYWEQLLLG\nSSSSEATVSLRLTSPVGVPENGSSRVKAFSDLLAPGKQLRVAEQQKPEMQLNPGRTFQSI\nPDLHEAEEGHGISGACHESQGDPSVPEAPIWDELGEALQAGPGLFSGDKPFECRACNKVF\nVKSSDLLKHLRTHTGERPYECAQCGKAFSQTSHLTQHQRIHSGETPYVCMVCSKAFRHSS\nSLVRHQRIHTVEKTFHCNECGKAFSHGSNLSQHRKIHAGGRPYACAQCGRRFCRNSHLIQ\nHERTHTGEKPYACSLCGAAFSQGSSLFKHQRVHTGEKPFSCPQCGRAFSHSSNLTQHQLL\nHTGERPFRCGDCGKAFAKGAVLLSHRRIHTGEKPFVCTQCGRAFRERPALFHHQRIHTGE\nKALRRPRGNMHSQIGSLGVSLDGTHPKATLDPPAVPNIAEA\n\n\n>tr|A0A8I6GKG8-1|D3ZB44_RAT Isoform 1 of Zinc finger protein 324 OS=Rattus norvegicus OX=10116 GN=Zfp324 PE=3 SV=1 CANONICAL=D3ZB44-1\nMPRSPARRAPPPLQIPMAVTWPLTDPARGLMAFEDVAVYFSQEEWMFLNAAQRALYRHVM\nLENFALVDSIELSKVSQISTRLRRDMG\n\n\n>tr|A0A0G2JZX0-1|A0A0G2JZX0_RAT Isoform 1 of Zinc finger, ZZ-type containing 3 OS=Rattus norvegicus OX=10116 GN=Zzz3 PE=4 SV=1 CANONICAL=M0R9X4-1\nMIDLWLCSYQRLLQTIAVLEAQRSQAVQDLESLGKHQREALKNPIGFVEKLQKKADIGLP\nYPQRVVQLPEIVWDQYTSSLGNFEREFKHRKRHTRRVKLVFDKVGLPARPKSPLDPKKDG\nDSLSYSMLPLSDGPEGSHHRPQMIRGRLCDDSKPETFNQLWTVEEQKKLEQLLLKYPPEE\nVESRRWQKIADELGNRTAKQVASRVQKYFIKLTKAGIPVPGRTPNLYIYSRKSSTSRRQH\nPLNKHLFKPSTFMTSHEPPVYMDEDDERSCPHSHMSTAVEEASDEESIPVIYRSLPEYKE\nLLQFKKLKKQKLQQMQAESGFVQHVGFKCDNCGVEPIQGVRWHCQDCPPEMSLDFCDSCS\nDCPHETDIHKEDHQLEPVYKSETFLDRDYCVSQGTSYSYLDPNYFPANR\n\n\n>tr|D3ZB41-1|D3ZB41_RAT Isoform 1 of Zinc finger protein 28 OS=Rattus norvegicus OX=10116 GN=Zfp78 PE=3 SV=3 CANONICAL=D3ZVD4-1\nMSVTNVAKPSRILPTSYDIRGFTLERSRTNVLSVGRHLVTAPPALSIRDFTLVRGPTRVR\nDVEGRSEQSHPLIATRAVTPERNRKTVSPVANPLAADKPGAFTREFSFQPDCSRGRFHRS\nQRALGNARDGETSSQMFLNHPSLGLVTFGDVAVVFSQEEWEWLTSEQRSLYWKVMLDNYR\nNLASLGLCASKPDMIALLEQGTDPWMMGRGRCTDLKAVQETKELPPKDLSEETSQAVLRR\nRLLHRRPMCYMSGASWGGDAVFKAQRGSKTNSDMARDSPPELVSAQKNFRKNATWENCDD\nLGLLGQQSVQEAQDSLPRQDSHAGRVTGSTWSTERACSAFRGDRDSECVFERNGQDTAFE\nSQNRAFSEGRDGVCLNSGRWFHLNSSEERSHNCDSGKTSLPNPTVIKETRIYSGKKLFKC\nNECKKTFTQSSSLTVHQRIHTGEKPYKCNECGKAFSDGSSFARHQRCHTGKKPYECLECG\nKAFIQNTSLVRHWRYYHTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPYTCDVCHKSF\nRYGSSLTVHQRIHTGEKPYECEICRKAFSHHASLTQHQRVHSGEKPFKCKECGKAFRQNI\nHLASHLRIHTGEKPFECGDCGKSFSISSQLATHQRIHTGEKPYECKVCNKAFTQKAHLAQ\nHQKTHTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPYKCLECGKAFGDNSSCTQHQRL\nHTGQRPYECVECGKAFKTKSSLICHRRCHTGEKPYECSACGKAFSHRQSLSVHQRIHSGK\nKPYECKECRKTFIQIGHLNQHKRVHAGERTYNCRKGRRAFRQIARFAHHQRIHSGELPAH\nPTLPSTSNPVDLFSKFVWNPSSLSSS\n\n\n>tr|A0A8I6G867-1|A0A8I6G867_RAT Isoform 1 of Alpha-1,4 glucan phosphorylase OS=Rattus norvegicus OX=10116 GN=Pygm PE=1 SV=1 CANONICAL=P09812-1\nMSRPLSDQDKRKQISVRGLAGVENVSDLKKNFNRHLHFTLVKDRNVATPRDYYFALAHTV\nRDHLVGRWIRTQQHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQVGELV\nGVGQRGFLPCFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKA\nRPEFTLPVHFYGRVEHTSQGAKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAPNDF\nNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK\nSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRILVDLERLDWDKAWDVTVKTC\nAYTNHTVLPEALERWPVHLMETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVE\nEGAVKRINMAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWL\nVLCNPGLAEVIAERIGEEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFSAYLERE\nYKVHINPNSLFDVQVKRIHEYKRQLLNCLHIITLYNRIKREPNRFMVPRTIMIGGKAAPG\nYHMAKMIIKLITAIGDVVNHDPAVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTE\nASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEDNFFIFGMRVEDVERLDQRGYNAQEYY\nDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHHDRFKVFADYEEYIKCQDKVSELYK\nVRGHRPGAGRVCPWLGMRERGPACW\n\n\n>tr|D3ZB49-1|D3ZB49_RAT Isoform 1 of Oxidative stress induced growth inhibitor family member 2 OS=Rattus norvegicus OX=10116 GN=Osgin2 PE=4 SV=1 CANONICAL=D3ZB49-1\nMPVWCCRCSLAGHFRNYSDTETEGEIFNSLVQYLGDNLGPKVKGMPLVEETSLLEDSSVT\nLPMVIIGNGPSGICLSYMLSGYRPYLSSEAIHPNAILHSKLEEARHLSIVDQDLEYLSEG\nLEGRSSNPVAVLFDTLLHPDADFGYDSPSILHWKLEQHHSIPHLVLGKGPPGGAWHNMEG\nSMLTISFGNWMELPGLKFKDWISSKRRNLKGDRVMPEEIARYYKHYVKVMGLQKNFRENT\nYITSVSRLYRDQGDNGSQDRDISAKHLQNQKSKFIKRNWEIRGYQRVAGGSHVPFCLFAE\nNVALATGTLDSPAHLEVEGEEFPFVFHSMPEFGAAINSGKLCGRVDPVLIVGSGLTAADA\nVLCAYNNNIPVIHVFRRRVTDPSLIFKQLPKKLYPEYHKVYHMMCTQSYSADSDHLSDYT\nSFPEHRVLSFKSDMKCILQSVSGLKKIFKLSAAVILIGSHPNLSFLKEQGCYLGRNSSQP\nISCKGNPVEIDAYTYECVKEANLFALGPLVGDNFVRFLKGGALGVTRCLVTRQKKKQHLF\nVQRGGGDGVA\n\n\n>tr|A0A8I6ASB1-1|D3ZB49_RAT Isoform 1 of Oxidative stress induced growth inhibitor family member 2 OS=Rattus norvegicus OX=10116 GN=Osgin2 PE=4 SV=1 CANONICAL=D3ZB49-1\nMVCGILWVTAMRGPKPNAPETVRGRELRNYSDTETEGEIFNSLVQYLGDNLGPKVKGMPL\nVEETSLLEDSSVTLPMVIIGNGPSGICLSYMLSGYRPYLSSEAIHPNAILHSKLEEARHL\nSIVDQDLEYLSEGLEGRSSNPVAVLFDTLLHPDADFGYDSPSILHWKLEQHHSIPHLVLG\nKGPPGGAWHNMEGSMLTISFGNWMELPGLKFKDWISSKRRNLKGDRVMPEEIARYYKHYV\nKVMGLQKNFRENTYITSVSRLYRDQGDNGSQDRDISAKHLQNQKSKFIKRNWEIRGYQRV\nAGGSHVPFCLFAENVALATGTLDSPAHLEVEGEEFPFVFHSMPEFGAAINSGKLCGRVDP\nVLIVGSGLTAADAVLCAYNNNIPVIHVFRRRVTDPSLIFKQLPKKLYPEYHKVYHMMCTQ\nSYSADSDHLSDYTSFPEHRVLSFKSDMKCILQSVSGLKKIFKLSAAVILIGSHPNLSFLK\nEQGCYLGRNSSQPISCKGNPVEIDAYTYECVKEANLFALGPLVGDNFVRFLKGGALGVTR\nCLVTRQKKKQHLFVQRGGGDGVA\n\n\n>tr|A0A8I6GKD4-1|D3ZB49_RAT Isoform 1 of Oxidative stress induced growth inhibitor family member 2 OS=Rattus norvegicus OX=10116 GN=Osgin2 PE=4 SV=1 CANONICAL=D3ZB49-1\nMPEEIARYYKHYVKVMGLQKNFRENTYITSVSRLYRDQGDNGSQDRDISAKHLQNQKSKF\nIKRNWEIRGYQRVAGGSHVPFCLFAENVALATGTLDSPAHLEVEGEEFPFVFHSMPEFGA\nAINSGKLCGRVDPVLIVGSGLTAADAVLCAYNNNIPVIHVFRRRVTDPSLIFKQLPKKLY\nPEYHKVYHMMCTQSYSADSDHLSDYTSFPEHRVLSFKSDMKCILQSVSGLKKIFKLSAAV\nILIGSHPNLSFLKEQGCYLGRNSSQPISCKGNPVEIDAYTYECVKEANLFALGPLVGDNF\nVRFLKGGALGVTRCLVTRQKKKQHLFVQRGGGDGVA\n\n\n>tr|D3ZB48-1|D3ZB48_RAT Isoform 1 of Hook microtubule-tethering protein 1 OS=Rattus norvegicus OX=10116 GN=Hook1 PE=1 SV=1 CANONICAL=D3ZB48-1\nMEDPQPLPQPELPLCDSLIIWLQTFKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWL\nSRIKDDVGDNWRIKASNLKKVLHGITSYYHEFLGQQISEELIPDLNQITESSDPVELGRL\nLQLILGCAVNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKEIVSSPASDAVGELEQQL\nKRALEELQEALAEKEELKQRCQELDMQVTALQDEKNSLVSENEMMNEKLDQLDGSFDDPN\nTMVAKKYFHVQLQLEQLQEENYRLEAAKDDYRVHCEELEKQLIEFQHRNDELTSLAEETR\nALKDEIDVLRATSDKANKLESTVEVYRQKLQDLNDLRKQVKSLQETNMMYMHNTVSLEEE\nLKKANAARAQLETYKRQVQDLHTKLSSESKRADTLAFEMKRLEEKHETLLKEKERLIEQR\nDTLKETNEELRCSKAQQDHLNQADSSATKSYENLAAEIMPVEYREVFIRLQHENKMLRLQ\nQEGTENERIEQLQEQLEQKHRKMNELETEQRLSKERIGELQQQIEDLQKSLQEQGSKSEG\nESSSKLKQKLEAHMEKLTEVHEELQKKQELIEDLQPDISQNAQKISELEAALQKKDEDMK\nAMEERYKMYLEKARNVIKTLDPKLNPASAEIMLLRKQLAEKDRRIEILESECKVAKFRDY\nEEKLIVSAWYNKSLAFQKLGMESRLVSGASACKDSVAAAPARSFLAQQRHITSTRRNLSV\nKVPAAASD\n\n\n</pre>"
    },
    "readme": "Name\n   - Rat Protein Isoform sequences (UniProtKB)\n\nVersion\n   - v-2.8.1\n\nCreated on\n  - 2019-09-06T14:06:38.982193\n\nModified on\n   - 2024-05-17T11:23:53.859Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Rat Protein Isoform sequences (UniProtKB) dataset contains Rattus norvegicus [taxid:10116] protein fasta sequences for the rat isoform accessions from the UniProtKB database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n\nDescription Domain\n   Keywords\n   - protein isoform sequences\n   - fasta\n   - UniProtKB\n   - protein alternative name\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB fasta sequence for all rat isoform accessions data from the triplestore containing triples from nt file and extracts it into a dataset in a fasta format. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-rattus-norvegicus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2025_01_17/uniprot-proteome-rattus-norvegicus.nt\n   Output Subdomain\n      Name: rat_protein_allsequences.fasta\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/rat_protein_allsequences.fasta\n      Name: rat_protein_allsequences.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/rat_protein_allsequences.stat.csv\n\nFields\n      Name: \"sequence\"\n     Description: \"Amino acid sequence\"\n      Unique Values: \"49462\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/rat_protein_allsequences.fasta"
}