{
    "bcoid": "GLY_000034",
    "title": "Mouse Protein Information (UniProtKB)",
    "description": "The Mouse Protein Information dataset contains Mus musculus [taxid:10090] UniProtKB canonical accessions ...",
    "filename_list": "mouse_protein_info_uniprotkb.csv",
    "filename": "mouse_protein_info_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Mus musculus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Protein Information"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q9WVQ1-1...",
                "MAGI2_MOUSE..."
            ],
            [
                "Q62267-1...",
                "SPR1B_MOUSE..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "uniprotkb_id..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_id"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_protein_mass"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_protein_length"
                }
            ],
            [
                "Q9WVQ1-1",
                "MAGI2_MOUSE",
                "140919",
                "1275"
            ],
            [
                "Q62267-1",
                "SPR1B_MOUSE",
                "16636",
                "153"
            ]
        ]
    },
    "readme": "Name\n   - Mouse Protein Information (UniProtKB)\n\nVersion\n   - v-2.8.1\n\nCreated on\n  - 2019-01-23T17:21:05.901631\n\nModified on\n   - 2024-06-03T20:27:04.962Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse Protein Information dataset contains Mus musculus [taxid:10090] UniProtKB canonical accessions with their UniProtKB entry [id/mnemonic] name and properties such as mass and length. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - UniProtKB entry id\n   - UniProtKB mnemonic name\n   - protein length\n   - protein mass\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB entry id/mnemonic name, protein mass and length for all canonical accessions from the triplestore containing triples from nt file and extracts it into a dataset as a csv format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-mus-musculus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2025_01_17/uniprot-proteome-mus-musculus.nt\n   Output Subdomain\n      Name: mouse_protein_info_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/mouse_protein_info_uniprotkb.csv\n      Name: mouse_protein_info_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/mouse_protein_info_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"21757\"\n      Name: \"uniprotkb_id\"\n     Description: \"The entry name or mnemonic identifier assigned to the protein accession that consists of up to 11 uppercase alphanumeric characters for UniProtKB/Swiss-Prot entry and up to 16 uppercase alphanumeric characters for UniProtKB/TrEMBL entry with a defined naming convention\"\n      Unique Values: \"21757\"\n      Name: \"uniprotkb_protein_mass\"\n     Description: \"Molecular Mass of the protein in Daltons (Da)\"\n      Unique Values: \"19387\"\n      Name: \"uniprotkb_protein_length\"\n     Description: \"Length of the protein sequence\"\n      Unique Values: \"2152\"",
    "downloadurl": "/ln2data/releases/data/v-2.8.1/reviewed/mouse_protein_info_uniprotkb.csv"
}