{
    "object_id": "https://biocomputeobject.org/GLY_000572/v-2.8.1",
    "spec_version": "1.3.0",
    "etag": "670569876a9741a2949f922143bdc556",
    "provenance_domain": {
        "name": "Rat Reactions (Rhea)",
        "version": "v-2.8.1",
        "created": "2021-06-03T17:43:30.579234",
        "modified": "2025-03-06T15:35:00.039Z",
        "contributors": [
            {
                "email": "jeetvora@gwu.edu",
                "contribution": [
                    "createdBy"
                ]
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Karina Martinez",
                "email": "karinamartinez@gwu.edu"
            },
            {
                "name": "Luke Johnson",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "luke.johnson@email.gwu.edu"
            },
            {
                "name": "Urnisha Bhuiyan",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "sbhuiyan28@email.gwu.edu"
            },
            {
                "name": "Cyrus Au-Yeung",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "cyruschauyeung@gwu.edu"
            },
            {
                "name": "Kate Warner",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "k.warner1@gwu.edu"
            }
        ]
    },
    "usability_domain": [
        "The Rat Recactions (Rhea) dataset offers detailed information on enzymatic pathways and equations involved in chemical and transport reactions specific to Rattus norvegicus [TaxID: 10116]. Rhea is a rigorously curated knowledgebase that catalogs biologically significant reactions and serves as the authoritative standard for enzyme and transporter annotation in UniProtKB. To characterize reaction participants, Rhea leverages the Chemical Entities of Biological Interest (ChEBI) dictionary."
    ],
    "parametric_domain": [
        {
            "value": ""
        }
    ],
    "io_domain": {
        "output_subdomain": [
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/rat_protein_reactions_rhea.csv",
                    "filename": "rat_protein_reactions_rhea.csv"
                }
            },
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/rat_protein_reactions_rhea.stat.csv",
                    "filename": "rat_protein_reactions_rhea.stat.csv"
                }
            }
        ],
        "input_subdomain": [
            {
                "uri": {
                    "filename": "uniprot-proteome-rattus-norvegicus.nt",
                    "uri": "https:/data.glygen.org/ln2downloads/ebi/2025_01_17/uniprot-proteome-rattus-norvegicus.nt"
                }
            }
        ]
    },
    "execution_domain": {
        "software_prerequisites": [
            {
                "version": "2.7.5",
                "name": "Python",
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ],
        "external_data_endpoints": [],
        "environment_variables": {}
    },
    "extension_domain": [
        {
            "extension_schema": "https://www.w3id.org/biocompute/extension_domain/1.2.0/dataset/dataset_extension.json",
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/",
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                },
                "dataset_categories": [
                    {
                        "category_value": "Rattus norvegicus",
                        "category_name": "species"
                    },
                    {
                        "category_value": "Protein",
                        "category_name": "molecule"
                    },
                    {
                        "category_value": "Reactions Rhea",
                        "category_name": "tag"
                    },
                    {
                        "category_value": "csv",
                        "category_name": "file_type"
                    },
                    {
                        "category_value": "Reviewed",
                        "category_name": "status"
                    },
                    {
                        "category_value": "internal",
                        "category_name": "scope"
                    }
                ]
            }
        }
    ],
    "error_domain": {}
}