{
    "object_id": "https://biocomputeobject.org/GLY_000540/v-2.8.1",
    "spec_version": "1.3.0",
    "etag": "3e14aec2977fa9721615a2f1a76191d5",
    "provenance_domain": {
        "name": "NCBI Gene Linkouts",
        "version": "v-2.8.1",
        "license": "https://creativecommons.org/licenses/by/4.0/",
        "created": "2021-02-22T17:05:56.978751",
        "modified": "2024-12-10T20:28:08.425Z",
        "contributors": [
            {
                "name": "Jeet Vora",
                "affiliation": "The George Washington University",
                "email": "jeetvora@gwu.edu",
                "contribution": [
                    "createdBy"
                ]
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Robel Kahsay",
                "email": "rykahsay@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Karina Martinez",
                "email": "karinamartinez@gwu.edu"
            },
            {
                "contribution": [
                    "contributedBy"
                ],
                "name": "Not Applicable"
            },
            {
                "name": "Luke Johnson",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "luke.johnson@email.gwu.edu"
            },
            {
                "name": "Urnisha Bhuiyan",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "sbhuiyan28@email.gwu.edu"
            },
            {
                "name": "Cyrus Au-Yeung",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "cyruschauyeung@gwu.edu"
            },
            {
                "name": "Kate Warner",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "k.warner1@gwu.edu"
            }
        ]
    },
    "usability_domain": [
        "The NCBI Gene Linkouts dataset contains NCBI Gene IDs with their corresponding GlyGen protein detail page URLs. The dataset is formatted as per NCBI non-bib linkout guidelines where 10277 is the GlyGen's provider ID."
    ],
    "parametric_domain": [
        {
            "value": ""
        }
    ],
    "io_domain": {
        "output_subdomain": [
            {
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/protein_ncbi_gene_linkouts.csv",
                    "filename": "protein_ncbi_gene_linkouts.csv"
                },
                "mediatype": "csv"
            },
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/protein_ncbi_gene_linkouts.stat.csv",
                    "filename": "protein_ncbi_gene_linkouts.stat.csv"
                }
            }
        ],
        "input_subdomain": [
            {
                "uri": {
                    "filename": "arabidopsis_protein_xref_geneid.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/arabidopsis_protein_xref_geneid.csv"
                }
            },
            {
                "uri": {
                    "filename": "bovine_protein_xref_geneid.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/bovine_protein_xref_geneid.csv"
                }
            },
            {
                "uri": {
                    "filename": "chicken_protein_xref_geneid.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/chicken_protein_xref_geneid.csv"
                }
            },
            {
                "uri": {
                    "filename": "dicty_protein_xref_geneid.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/dicty_protein_xref_geneid.csv"
                }
            },
            {
                "uri": {
                    "filename": "fruitfly_protein_xref_geneid.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/fruitfly_protein_xref_geneid.csv"
                }
            },
            {
                "uri": {
                    "filename": "hamster_protein_xref_geneid.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/hamster_protein_xref_geneid.csv"
                }
            },
            {
                "uri": {
                    "filename": "human_protein_xref_geneid.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/human_protein_xref_geneid.csv"
                }
            },
            {
                "uri": {
                    "filename": "mouse_protein_xref_geneid.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/mouse_protein_xref_geneid.csv"
                }
            },
            {
                "uri": {
                    "filename": "pig_protein_xref_geneid.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/pig_protein_xref_geneid.csv"
                }
            },
            {
                "uri": {
                    "filename": "rat_protein_xref_geneid.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/rat_protein_xref_geneid.csv"
                }
            },
            {
                "uri": {
                    "filename": "sarscov1_protein_xref_geneid.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/sarscov1_protein_xref_geneid.csv"
                }
            },
            {
                "uri": {
                    "filename": "sarscov2_protein_xref_geneid.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/sarscov2_protein_xref_geneid.csv"
                }
            },
            {
                "uri": {
                    "filename": "yeast_protein_xref_geneid.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/yeast_protein_xref_geneid.csv"
                }
            },
            {
                "uri": {
                    "filename": "zebrafish_protein_xref_geneid.csv",
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/zebrafish_protein_xref_geneid.csv"
                }
            }
        ]
    },
    "execution_domain": {
        "software_prerequisites": [
            {
                "version": "2.7.5",
                "name": "Python",
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ],
        "external_data_endpoints": [],
        "environment_variables": {}
    },
    "extension_domain": [
        {
            "extension_schema": "https://www.w3id.org/biocompute/extension_domain/1.2.0/dataset/dataset_extension.json",
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/",
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                },
                "dataset_categories": [
                    {
                        "category_value": "Protein",
                        "category_name": "molecule"
                    },
                    {
                        "category_value": "NCBI Linkout",
                        "category_name": "tag"
                    },
                    {
                        "category_value": "Reviewed",
                        "category_name": "status"
                    },
                    {
                        "category_value": "csv",
                        "category_name": "file_type"
                    },
                    {
                        "category_value": "internal",
                        "category_name": "scope"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Sus scrofa"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Rattus"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Homo sapiens"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Mus musculus"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Saccharomyces cerevisiae S288C"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Drosophila melanogaster"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Rattus norvegicus"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Severe acute respiratory syndrome coronavirus 2"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Dictyostelium discoideum"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Hepatitis C virus (isolate H77)"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Severe acute respiratory syndrome-related coronavirus"
                    },
                    {
                        "category_name": "species",
                        "category_value": "Gallus gallus"
                    }
                ]
            }
        }
    ],
    "error_domain": {}
}
