{
    "object_id": "https://biocomputeobject.org/GLY_000225/v-2.8.1",
    "spec_version": "1.3.0",
    "etag": "f393be5abc7a07f8885c6460ea538a8b",
    "provenance_domain": {
        "name": "Human Protein Glycosylation Diseases",
        "version": "v-2.8.1",
        "license": "https://creativecommons.org/licenses/by/4.0/",
        "created": "2019-09-06T14:06:38.953629",
        "modified": "2024-12-10T17:00:22.701Z",
        "contributors": [
            {
                "name": "Jeet Vora",
                "affiliation": "The George Washington University",
                "email": "jeetvora@gwu.edu",
                "contribution": [
                    "createdBy"
                ]
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Robel Kahsay",
                "email": "rykahsay@gwu.edu"
            },
            {
                "affiliation": "EMBL-EBI-UniProt",
                "contribution": [
                    "contributedBy"
                ],
                "name": "Maria Martin",
                "email": "martin@ebi.ac.uk"
            },
            {
                "affiliation": "EMBL-EBI-UniProt",
                "contribution": [
                    "contributedBy"
                ],
                "name": "Preethi Vasudev",
                "email": "pvasudev@ebi.ac.uk"
            },
            {
                "affiliation": "Monarch Initiative - Oregon Health & Science University",
                "contribution": [
                    "contributedBy"
                ],
                "name": "Jean-Philippe Gourdine",
                "email": "gourdine@ohsu.edu"
            },
            {
                "affiliation": "Monarch Initiative - Oregon Health & Science University",
                "contribution": [
                    "contributedBy"
                ],
                "name": "Melissa Haendel",
                "email": "haendel@ohsu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Karina Martinez",
                "email": "karinamartinez@gwu.edu"
            },
            {
                "name": "Luke Johnson",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "luke.johnson@email.gwu.edu"
            },
            {
                "name": "Urnisha Bhuiyan",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "sbhuiyan28@email.gwu.edu"
            },
            {
                "name": "Cyrus Au-Yeung",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "cyruschauyeung@gwu.edu"
            },
            {
                "name": "Kate Warner",
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "email": "k.warner1@gwu.edu"
            }
        ]
    },
    "usability_domain": [
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        "Online Mendelian Inheritance in Man (OMIM) is a continuously updated catalog of human genes and genetic disorders and traits, with a particular focus on the gene-phenotype relationship. ",
        "The Monarch Initiative is focused primarily on phenotype-related resources and brings in data associated with those phenotypes so that the users can begin to make connections among other biological entities of interest. ",
        "If you are using this dataset please give proper attribution to OMIM, Monarch Initiative, EMBL-EBI-UniProt and GlyGen. "
    ],
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                "name": "make-protein-dataset.py",
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                "output_list": []
            }
        ],
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            "HPO",
            "OMIM",
            "Congenital Disorders of Glycosylation (CDG)",
            "Monarch Initiative"
        ]
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    "parametric_domain": [
        {
            "value": ""
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    ],
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                    "filename": "human_protein_disease_glyco.csv"
                }
            },
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.8.1/reviewed/human_protein_disease_glyco.stat.csv",
                    "filename": "human_protein_disease_glyco.stat.csv"
                }
            }
        ],
        "input_subdomain": [
            {
                "uri": {
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                    "uri": "https:/data.glygen.org/ln2releases/data/v-2.8.1/compiled/human_protein_disease_glyco.csv"
                }
            }
        ]
    },
    "execution_domain": {
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py",
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                }
            }
        ],
        "script_driver": "manual",
        "software_prerequisites": [
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                "version": "2.7.5",
                "name": "Python",
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
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            }
        ],
        "external_data_endpoints": [],
        "environment_variables": {}
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    "extension_domain": [
        {
            "extension_schema": "https://www.w3id.org/biocompute/extension_domain/1.2.0/dataset/dataset_extension.json",
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/",
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                },
                "dataset_categories": [
                    {
                        "category_value": "Homo sapiens",
                        "category_name": "species"
                    },
                    {
                        "category_value": "Protein",
                        "category_name": "molecule"
                    },
                    {
                        "category_value": "Diseases_Glyco",
                        "category_name": "tag"
                    },
                    {
                        "category_value": "csv",
                        "category_name": "file_type"
                    },
                    {
                        "category_value": "Reviewed",
                        "category_name": "status"
                    },
                    {
                        "category_value": "internal",
                        "category_name": "scope"
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                ]
            }
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    ],
    "error_domain": {}
}