{ "uniprot_canonical_ac": "A0A1D5PDL4-1", "uniprot_ac": "A0A1D5PDL4", "uniprot_id": "A0A1D5PDL4_CHICK", "mass": { "chemical_mass": 125016.0, "monoisotopic_mass": 125016.0 }, "refseq": { "ac": "XP_015143411", "name": "WD repeat and HMG-box DNA-binding protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_015143411" }, "gene_names": [ { "name": "WDHD1", "resource": "UniProtKB", "type": "recommended", "url": "https://www.uniprot.org/uniprot/A0A1D5PDL4", "id": "A0A1D5PDL4" }, { "name": "WDHD1", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_015143411", "id": "XP_015143411" } ], "protein_names": [ { "name": "WD repeat and HMG-box DNA binding protein 1", "resource": "UniProtKB", "type": "synonym", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PDL4/entry#names_and_taxonomy", "id": "A0A1D5PDL4" }, { "name": "WD repeat and HMG-box DNA-binding protein 1", "resource": "RefSeq", "type": "synonym", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_015143411", "id": "XP_015143411" } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052536.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_015143411", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_015143411" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Gallus gallus", "taxid": 9031, "evidence": [ { "database": "UniProtKB", "id": "A0A1D5PDL4", "url": "https://www.uniprot.org/uniprot/A0A1D5PDL4" } ], "common_name": "Chicken", "glygen_name": "Chicken", "reference_species": "Gallus gallus [9031]" } ], "gene": [ { "name": "WDHD1", "url": "https://www.uniprot.org/uniprot/A0A1D5PDL4", "locus": { "chromosome": "5", "start_pos": 55982546, "end_pos": 55901925, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSGALG00010018780", "url": "https://www.ensembl.org/id/ENSGALG00010018780" } ] } } ], "crossref": [ { "id": "A0A1D5PDL4", "url": "https://alphafold.ebi.ac.uk/entry/A0A1D5PDL4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSGALG00000012199", "url": "https://bgee.org/?page=gene&gene_id=ENSGALG00000012199", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21993", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21993", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "423558", "url": "https://www.ncbi.nlm.nih.gov/gene/423558", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022100", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022100", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036910", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036910", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "gga:423558", "url": "https://www.genome.jp/dbget-bin/www_bget?gga:423558", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NAWFPIC", "url": "https://omabrowser.org/oma/group/NAWFPIC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR19932", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19932", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19932:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19932:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "PF00505", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00505", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "PF08662", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08662", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "PF12341", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12341", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "PF20946", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20946", "database": "Pfam", "categories": [ "Protein Classification" ] }, { "id": "XP_015143411", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_015143411", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A1D5PDL4", "url": "https://www.uniprot.org/uniprot/A0A1D5PDL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A1D5PDL4-1", "url": "https://www.uniprot.org/uniprot/A0A1D5PDL4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8V0ZEU8", "url": "https://www.uniprot.org/uniprot/A0A8V0ZEU8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8V0ZEU8-1", "url": "https://www.uniprot.org/uniprot/A0A8V0ZEU8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPSEQKPMRYGHTEGHTDVCFDDSGSCIVTCGSDGDVRIWENLDDDDPKSINVGEKAYSCALKNGKLITAVSNNTVQIHTFPEGAPDGILTRFTMNANHVVFNSDGAKIAAGSSDFMVKVVEVADSSKQKTFRGHDAPVLSLSFDPMDIYLASASCDGSVRVWKVEDQTCVTNWLLLQKCNDVINAKSICRLAWQPGSGKLLAIPVDKVVKLYRRETWDNQVDLSDTSITQPLNVVVWSPCGQYLAAGSVNGSIVVWKVETRECTERMKHEKSYSICGLAWHPRYEQIAYTDTEGNLGLWEDIGDGKKPNDKVASTVTKDYEDLFDGDDDDYLNGDMIEPPSSPNTGANEDHGDDDDLMPTSGHPRRAIIDDDDNSLDIGMIKANSNLLEKEEDDDDQIGGFPALPTSSTQQPFYDGPRPTPRQKPFQSGSTPVHLMHRFMVWNSVGIIRCYNDEQDNAIDIEFHDTSIHHATHLPNSLNHTMADLSTEAILLACESTEELASKLHCIYFSSWDANKEWTVDMPKDEDIEAICLGQGWAACATSALLVRLFTVGGVQKEIFCLPGPVVSMAGHGEQLMVIYHRGTGFDGDQCLGVQLMELGKKKKQILHGDPLSLTKKSYLVWVGFSAEGTPCYVDSEGIVRMLNRGLGNTWIPVCNTREHCKGKSDHYWVVGIHENPQQLRCIPCKGARFPPTLPRPAVAILPFTLPYCQVTTEKGQMEEQYWRSVVFHNYVDYLSKNGYELDENAKSQPVKEQQELLMKLFALSCKLEREFRCVELADLMTQNVVNLAIKYASRSRRLNLAQRLSEMAVEKASELATALEDEEEEEEEDFRTHLNAGYSTSATEWGRLPGRSAQQDQEMEEAEETNGYEEAEGTPEVPKQRPNPFSKAVSSAEVITPKSAVIASSSQGRVNPFKVSSNKKDPLVPSSNVLDTMSKYSKKISSSRAVNKQSSPVIKPLIPKPKSKQASAASFFQVRTPGSSEKRVGEREEKAGHEPPEVQVTAQDNTENKRPKTGFQMWLEENRANILTDNPDLNEAEVIKEGMSRFRILSSEERMVWTEKAKGGAVTDLTEDKKRKRPTAAEDEAKKNEEQKSEDSNVSKKKKPLDQATNVRLSSFAFKQS", "length": 1123, "header": "tr|A0A1D5PDL4-1|A0A1D5PDL4_CHICK Isoform 1 of WD repeat and HMG-box DNA binding protein 1 OS=Gallus gallus OX=9031 GN=WDHD1 PE=4 SV=3 CANONICAL=A0A1D5PDL4-1" }, "isoforms": [ { "isoform_ac": "A0A1D5PDL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PDL4/entry#A0A1D5PDL4-1", "sequence": { "sequence": "MPSEQKPMRYGHTEGHTDVCFDDSGSCIVTCGSDGDVRIWENLDDDDPKSINVGEKAYSCALKNGKLITAVSNNTVQIHTFPEGAPDGILTRFTMNANHVVFNSDGAKIAAGSSDFMVKVVEVADSSKQKTFRGHDAPVLSLSFDPMDIYLASASCDGSVRVWKVEDQTCVTNWLLLQKCNDVINAKSICRLAWQPGSGKLLAIPVDKVVKLYRRETWDNQVDLSDTSITQPLNVVVWSPCGQYLAAGSVNGSIVVWKVETRECTERMKHEKSYSICGLAWHPRYEQIAYTDTEGNLGLWEDIGDGKKPNDKVASTVTKDYEDLFDGDDDDYLNGDMIEPPSSPNTGANEDHGDDDDLMPTSGHPRRAIIDDDDNSLDIGMIKANSNLLEKEEDDDDQIGGFPALPTSSTQQPFYDGPRPTPRQKPFQSGSTPVHLMHRFMVWNSVGIIRCYNDEQDNAIDIEFHDTSIHHATHLPNSLNHTMADLSTEAILLACESTEELASKLHCIYFSSWDANKEWTVDMPKDEDIEAICLGQGWAACATSALLVRLFTVGGVQKEIFCLPGPVVSMAGHGEQLMVIYHRGTGFDGDQCLGVQLMELGKKKKQILHGDPLSLTKKSYLVWVGFSAEGTPCYVDSEGIVRMLNRGLGNTWIPVCNTREHCKGKSDHYWVVGIHENPQQLRCIPCKGARFPPTLPRPAVAILPFTLPYCQVTTEKGQMEEQYWRSVVFHNYVDYLSKNGYELDENAKSQPVKEQQELLMKLFALSCKLEREFRCVELADLMTQNVVNLAIKYASRSRRLNLAQRLSEMAVEKASELATALEDEEEEEEEDFRTHLNAGYSTSATEWGRLPGRSAQQDQEMEEAEETNGYEEAEGTPEVPKQRPNPFSKAVSSAEVITPKSAVIASSSQGRVNPFKVSSNKKDPLVPSSNVLDTMSKYSKKISSSRAVNKQSSPVIKPLIPKPKSKQASAASFFQVRTPGSSEKRVGEREEKAGHEPPEVQVTAQDNTENKRPKTGFQMWLEENRANILTDNPDLNEAEVIKEGMSRFRILSSEERMVWTEKAKGGAVTDLTEDKKRKRPTAAEDEAKKNEEQKSEDSNVSKKKKPLDQATNVRLSSFAFKQS", "length": 1123, "header": "tr|A0A1D5PDL4-1|A0A1D5PDL4_CHICK Isoform 1 of WD repeat and HMG-box DNA binding protein 1 OS=Gallus gallus OX=9031 GN=WDHD1 PE=4 SV=3 CANONICAL=A0A1D5PDL4-1" }, "locus": { "chromosome": "5", "start_pos": 55931714, "end_pos": 55902298, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSGALT00010045379.1", "url": "https://www.ensembl.org/id/ENSGALT00010045379.1" }, { "database": "Ensembl Peptide", "id": "ENSGALP00010027087.1", "url": "https://www.ensembl.org/id/ENSGALP00010027087.1" } ] } }, { "isoform_ac": "A0A8V0ZEU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A1D5PDL4/entry#A0A8V0ZEU8-1", "sequence": { "sequence": "MPSEQKPMRYGHTEGHTDVCFDDSGSCIVTCGSDGDVRIWENLDDDDPKSINVGEKAYSCALKNGKLITAVSNNTVQIHTFPEGAPDGILTRFTMNANHVVFNNDDDYLNGDMIEPPSSPNTGANEDHGDDDDLMPTSGHPRRAIIDDDDNSLDIGMIKANSNLLEKEEDDDDQIGGFPALPTSSTQQPFYDGPRPTPRQKPFQSGSTPVHLMHRFMVWNSVGIIRCYNDEQDNAIDIEFHDTSIHHATHLPNSLNHTMADLSTEAILLACESTEELASKLHCIYFSSWDANKEWTVDMPKDEDIEAICLGQGWAACATSALLVRLFTVGGVQKEIFCLPGPVVSMAGHGEQLMVIYHRGTGFDGDQCLGVQLMELGKKKKQILHGDPLSLTKKSYLVWVGFSAEGTPCYVDSEGIVRMLNRGLGNTWIPVCNTREHCKGKSDHYWVVGIHENPQQLRCIPCKGARFPPTLPRPAVAILPFTLPYCQVTTEKGQMEEQYWRSVVFHNYVDYLSKNGYELDENAKSQPVKEQQELLMKLFALSCKLEREFRCVELADLMTQNVVNLAIKYASRSRRLNLAQRLSEMAVEKASELATALEDEEEEEEEDFRTHLNAGYSTSATEWGRLPGRSAQQDQEMEEAEETNGYEEAEGTPEVPKQRPNPFSKAVSSAEVITPKSAVIASSSQGRVNPFKVSSNKKDPLVPSSNVLDTMSKYSKKISSSRAVNKQSSPVIKPLIPKPKSKQASAASFFQVRTPGSSEKRVGEREEKAGHEPPEVQVTAQDNTENKRPKTGFQMWLEENRANILTDNPDLNEAEVIKEGMSRFRILSSEERMVWTEKAKGGAVTDLTEDKKRKRPTAAEDEAKKNEEQKSEDSNVSKKKKPLDQATNVRLSSFAFKQS", "length": 899, "header": "tr|A0A8V0ZEU8-1|A0A1D5PDL4_CHICK Computationally mapped isoform of WD repeat and HMG-box DNA binding protein 1 OS=Gallus gallus OX=9031 GN=WDHD1 PE=4 SV=1 CANONICAL=A0A1D5PDL4-1" }, "locus": { "chromosome": "5", "start_pos": 55931714, "end_pos": 55902298, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSGALT00010045372.1", "url": "https://www.ensembl.org/id/ENSGALT00010045372.1" }, { "database": "Ensembl Peptide", "id": "ENSGALP00010027084.1", "url": "https://www.ensembl.org/id/ENSGALP00010027084.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool": "isoglyp", "mining_tool": "", "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "start_pos": 421, "start_aa": "T", "end_pos": 421, "end_aa": "T", "residue": "Thr", "site_lbl": "Thr421", "evidence": [ { "id": "GLY_001161", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001161" } ], "filter_code": "00000000000000001000.00000000001000.1.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [], "pathway": [ { "id": "gga:423558", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?gga:423558", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZN63-1", "protein_name": "WD repeat and HMG-box DNA binding protein 1", "gene_name": "Wdhd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPAIQKPMRYGHTEGHTEVCFDDSGSFIVTCGSDGDVRMWEDLDDDDPKSVNVGEKAFSCALKNGKLVTAVSNNTVQVYTFPEGAPDGILTRFTTNANHVVFNGDGTKIAAGSSDFLVKVVDVMDNSQQQTFRGHDAPVLSLSFDPKDVFLASASCDGTVRVWNISDQTCAASWPVLRKSNDVVNSESICRLAWQPKTGKFLAVPVEKSVKLYRRETWSNPFDLSDSSVTQTLNIVTWSPCGQYLAAGAINGLIVVWNVETKECMERVKHEKGYAICGLAWHPTYSRICYTDVEGNLGILENVCDLSGKLSSNKVPSGVEKDYSDLFDGDDTSSAGDFLNDNAVEIPSFSKGIRNEEDDNDDLMLAADHVLGDDENSVDVTMLRNDLHREEGEDRQASSLHSLPLVKSQRPLYDGPMPTPRQKPFQPSSTPLHLTHRFMAWNSVGIIRCYNDDQDSAIDVEFHDTSIHHATHLSNAFNYTMGSLSHEAVLLACESADELASKLHCLHFSSWDSSKEWIVDMPENEDIEAICLGLGWAAAATSALLLRLFTIGGVQKEVFCLPGPVVSMAGHGEQLCIVYHRGTGFDGDQCLGVQLLELGRKKKQVLHGDPLPLTRKSYLTWLGFSAEGTPCYVDSEGCVRMLNRGLGNTWTPVCNIREHCKGKSDHYWVVGIHENPQQLRCIPCKGSRFPPTLPRPAVAILPFKLPYCQTSTEKGQMEEQFWHSVLFHNYLDYLAENGYDYEESIKKQAVKEQQELLMKMLALSCKLEREFRCVELADLMTQNAVHLAIKYASRSRKLILAQKLSELAAEKAAELAEIQTEEREEDFRERLNAGYSHTTTEWSQPRVRSQVEEDAEDREDTVSEGNPEPQNHVIGQNLIQSANSSDTPAMKSGAVFSSSQGRVNPFKVLVSSKEPAVSVNATRSANILDNMNKLSRKSTSFNRVANNEKSPVIKPLIPKPRCKQASAASYFQKRTSQAEKTEEVKENPKSSSSEAPAVCLQNSEVQRPKTGFQMWLEENRSHIMSDNPDISDEADIIKEGMIRFRVLSAEERKEWTNKAKGGTASDGAEAKKRKRGVSEICETEKQEEAVKENLELSKKQKALDLSTNQKLSAFAFKQE", "length": 1119 }, "evidence": [ { "id": "A0A1D5PDL4", "url": "https://omabrowser.org/oma/group/A0A1D5PDL4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1B7F5-1", "protein_name": "WD repeat and HMG-box DNA binding protein 1", "gene_name": "WDHD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPATQKPMRYGHTEGHTDVCFDDSGSCIVTCGSDGDVRIWEDLDDDDPKSINVGEKAYSCALKNGKLVTAVSNNTIQVHTFPEGVPDGILTRFTTNANHVVFNGDGTKIAAGSSDFLVKIVDVMDCSQQKTFRGHDAPVLSLSFDPKDIFLASSSCDGSVKVWQISDQTCPISWPLLQKCNDVVNAKSICRLAWQPKSGKLLAVPVEKSVKLYKRETWSNQFDLSDDVISQTLNIVTWSPCGQYLAAGSINGLIIIWNVETKNCIERVKHEKGYAICGLSWHPTCGQIAYTDAEGNLGLLENVCDPSGKMSNRKVSSRVEKDYNDLFDGDDTSNVGDCLNDSAVKTHSFSKGIVNDEEDDDDLMLASGRPRQRSHILEDDENSVDVTMLKIGSSLFKEEEDDQGGSIHNLPVVTSQRPFYDGPMPTPRQKPFQSGSTPLHLTHRFMVWNSIGIIRCYNDEQDNAIDVEFHDTSIHHATHLLNTFNYTVADLSHEAVLLACESTDELASKLHCLHLSSWDSSKEWIVDMPPNEDIEAICLGQGWAAAATSSLLLRLFTIGGVQKEVFSLPGPIVSMAGHGEQLVIVYHRGTGFDGDQCLGVQLLELGKKKKQILHGDPLPLTRKSYLVWVGFSAEGTPCYVDSEGIVRMLNRGLGHTWTPVCNTREHCKGKSDHYWVVGIHENPQQLRCIPCKGSRFPPTLPRPAVAVLSFKLPYCQTATEKGQMEEQYWRSVIFHNHLDYLAKNGYEYEESTKNQATKEQQELLLKMLALSCKLEREFRCVELAGLMTQNAVNLAIKYASRSRRLILAQRLGELAVEKAAELAATQAEEEEEEDFRKKLNVGYSNTSTEWSQPRLRNQVEEDTEDNGEADNTEENTEIHKHGQNPFFKSADSSDMPALKSGAVTSSSQGRINPFKVSGNSKEPAISVSSGRSTNILDTMNKSSKKSTALNRATDNEKSPVIKPLIPKPKPKQASAASFFQKRTSQADRTEEVKEENPKNSSSETPAVCPQNTENQRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMVRFKVLSSEERKAWAARAKGGTASDGAEEKKRKRVVDESQETENQEEKMKNLNLPKKQKPLDLSTNQKLSAFAFKQE", "length": 1127 }, "evidence": [ { "id": "A0A1D5PDL4", "url": "https://omabrowser.org/oma/group/A0A1D5PDL4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1SSP1-1", "protein_name": "WD repeat and HMG-box DNA binding protein 1", "gene_name": "WDHD1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPATQKPMRYGHTEGHTDVCFDDSGSCIVTCGSDGDVRIWEDLDDDDPKSINVGEKAYSCALKNGKLVTAVSNNTIQVHTFPEGVPDGILTRFTTNANHVIFNEDGTKIAAGSSDFLVKVVDVMDCSQQKTFRGHDAPVLSLSFDPKDIFLASSSCDGSVKVWQISDQTCAISWPLLQKCNDVINAKSICRLAWQPKSGKLLAVPVEKSVKLYRRETWSNQFDLSDNFISQTLNIVTWSPCGQYLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLSWHPTCGQIAYTDAEGNLGLLENVCDPNGKMSGSKVSSRVERDYNDLFDGDDTGNVGDFPNDNAVETHSFSKETRNDEEDDDDLMLASGRPRQRSHILEDDENSVDVTMLKTGSSRLKEEEEDDQAGNIHSLPLITSQKPFYDGPMPTPRQKPFQSGSTPLHLTHRFMVWNSIGIIRCYNDEQDNAIDVEFHDTSIHHATHLSNTLNYTVADLSHEAILLACESTDELASKLHCLHFSSWDSSKEWIVDMPPNEDIEAVCLGQGWAAAATSSLLLRLFTIGGVQKEVFSLPGPVVSMAGHGEQLIIVYHRGTGFDGDQCLGIQLLQLGKKKKQILHGDPLPLTRKSYLVWLGFSAEGTPCYVDSEGIVRMLNRGLGYTWTPICNTREHCKGKSDHYWVVGIHENPQHLRCIPCKGSRFPPTLPRPAIAVLSFKLPYCQTGTEKGQMEEQYWRSVLFHNHLDYLAKSGYEYEESTKNQAIKEQQELLMKMLALSCKLEREFRCVELADLMTQNAVNLAIKYASRSRRLILAQKLSELAVEKAAELAAPQAEEEEEEEEDFRKKLNAGYSNTPTEWSQPRLRNRVEEDTEDTEEVDDIEEKPEIHKHRQNPFFKSADSTDVPAIKSGAVTSSSQGRINPFKVSGSSKEPANSFSSVRSTNILDNMNKSKKSALNRATNNEKSPVIKPLVPKPKSKQASAASFFQKRTSQTDKTEEIKEENTKNSSSETPAVCPQNTENQRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMVRFRVLSAEERKAWAAKAKGGIASDGAEEKKRKRVVDESHETENQEEKTKENLNLPKKQKPLNLSANQKLSAFAFKQE", "length": 1129 }, "evidence": [ { "id": "A0A1D5PDL4", "url": "https://omabrowser.org/oma/group/A0A1D5PDL4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F4JF14-1", "protein_name": "Protein ENHANCER OF LHP1 1", "gene_name": "EOL1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKSRSLKLREAHKVGGSAAFCSILWDHKAEHFVTSSSSDPSISVHDGLSTSTLPPTILRHHQDGVTSLALSNDSTLLASGSIDHCVKLYKFPSGEFQTNITRFTLPIRVLAFNGSGSLLAAAGDDEGIKLINTFDGSIVRVLKGHKGPVTGLDFHPNGELLASIDTTGTVLCWELQNGVVSFTLKGVAPDTGFNTSIVNIPRWSPDGRTLAVPGLRNDVVMYDRFTGEKLFALRGDHLEAICYLTWAPNGKYIATSGLDKQVLLWDVDKKQDIDRHKFEERICCMSWKPNGNALSVIDAKGRYGVWESLVPSSMLSPTVGVPDIVPKKRNEILDFDDEVEEEIYRASESLDDAMGDSDDGESHHTSRKRLRKKTLIDEDVDDAYEELNDGSSLPSASEYRKKSHRGHREKQGARSGAFKGISASTKYKMQSSFQPGATPPEPGKRTFLCYNMLGCITTIEHEGNSRIETDFHDTGRGPRVSSMIDIYGFTMASINETGCVFANPCKGEKNMSVLMYRPFRSWASNSEWTMRFEGEEVKVVANGSGWVAAVTSLNLLRVFSEGGLQKHILSLDGPVVTAVGCKDHLAVVTHVSDCLPSNEQVMEFRVFNISKMTQELKGRVALTPGSRLTWIGFSEEGSLSSYDSEGVLRVFTSQYGGSWIPVFSTSKEKKQEENYWVVGLNTSSLYCIACKYAEMFPQVTPKPILTILDLSLPLASSDLGAASLENELILKQLRLYETQRKVDDMALVGVDTTALEDEAFDLEVSQDKCILRLISSCCSSDSFARASELMELLTLEKSMRAAITLVTKLKLPFLAEKFSSILEERLLEEASEAAVTNPALNPNGEVVTRVESKVQNPPASIQTSENTEAVMKSSATKLSAPTLLKKSKVSEGLKLGKEQTKKDKSDDAKIKEIKKLNLKNPVNNVNKEDKGQEKEVNQGEARRSSNPFLKSTV", "length": 953 }, "evidence": [ { "id": "A0A1D5PDL4", "url": "https://omabrowser.org/oma/group/A0A1D5PDL4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O75717-1", "protein_name": "WD repeat and HMG-box DNA-binding protein 1", "gene_name": "WDHD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPATRKPMRYGHTEGHTEVCFDDSGSFIVTCGSDGDVRIWEDLDDDDPKFINVGEKAYSCALKSGKLVTAVSNNTIQVHTFPEGVPDGILTRFTTNANHVVFNGDGTKIAAGSSDFLVKIVDVMDSSQQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQYLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGNLGLLENVCDPSGKTSSSKVSSRVEKDYNDLFDGDDMSNAGDFLNDNAVEIPSFSKGIINDDEDDEDLMMASGRPRQRSHILEDDENSVDISMLKTGSSLLKEEEEDGQEGSIHNLPLVTSQRPFYDGPMPTPRQKPFQSGSTPLHLTHRFMVWNSIGIIRCYNDEQDNAIDVEFHDTSIHHATHLSNTLNYTIADLSHEAILLACESTDELASKLHCLHFSSWDSSKEWIIDLPQNEDIEAICLGQGWAAAATSALLLRLFTIGGVQKEVFSLAGPVVSMAGHGEQLFIVYHRGTGFDGDQCLGVQLLELGKKKKQILHGDPLPLTRKSYLAWIGFSAEGTPCYVDSEGIVRMLNRGLGNTWTPICNTREHCKGKSDHYWVVGIHENPQQLRCIPCKGSRFPPTLPRPAVAILSFKLPYCQIATEKGQMEEQFWRSVIFHNHLDYLAKNGYEYEESTKNQATKEQQELLMKMLALSCKLEREFRCVELADLMTQNAVNLAIKYASRSRKLILAQKLSELAVEKAAELTATQVEEEEEEEDFRKKLNAGYSNTATEWSQPRFRNQVEEDAEDSGEADDEEKPEIHKPGQNSFSKSTNSSDVSAKSGAVTFSSQGRVNPFKVSASSKEPAMSMNSARSTNILDNMGKSSKKSTALSRTTNNEKSPIIKPLIPKPKPKQASAASYFQKRNSQTNKTEEVKEENLKNVLSETPAICPPQNTENQRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGETASEGTEAKKRKRVVDESDETENQEEKAKENLNLSKKQKPLDFSTNQKLSAFAFKQE", "length": 1129 }, "evidence": [ { "id": "A0A1D5PDL4", "url": "https://omabrowser.org/oma/group/A0A1D5PDL4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P59328-1", "protein_name": "WD repeat and HMG-box DNA-binding protein 1", "gene_name": "Wdhd1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPATQKPMRYGHTEGHTEVCFDDSGSYIVTCGSDGDVRMWEDLDDDDPKSVNVGEKAFSCALKNGKLVTAVSNNTVQVYTFPEGVPDGILTRFTTNANHVVFNGAGNKIAAGSSDFLVKVVDVMDNSQQQTFRGHDAPVLSLSFDPKDIFLASASCDGTVRVWNISDQTCAVSWPVLQKSNDVVNAKSICRLAWQPKAGKLLAVPVEKSVKLYRRETWSNPFDLSDSSISQTLNIVTWSPCGQYLAAGAINGLIVVWNVETKDCMERVKHEKGYAICGLAWHPTCSRICYTDVEGNLGVLENVCDLSGKVSSNKVSSRVEKDYNDLFDGDDTSSAGDFLNDNAVEIPSFSKGIINEDDDNDDIMLAADHDLGDDENSVDVTMLKADLSHKEEGDDDQARSIHNLPLIRPQRPFYDGPMPTPRQKPFQSSSTPLHLSHRFMVWNSVGIIRCYNDDQDSAIDVEFHDTSIHHATHLLNAFNYTMGTLSHEAILLACESADELASKLHCLHFSSWDSSKEWMVDMPQNEDIEAICLGLGWAAAATTALLLRLFTIGGVQKEVFCLPGPVVSMAGHGEQLCIVYHRGTGFDGDQCLGVQLLELGRKKNQVLHGDPLPLTRKSYLTWLGFSAEGTPCYVDSEGCVRMLNRGLGNTWTPVCNIREHCKGKSDHYWVVGIHENPQQLRCIPCKGSRFPPTLPRPAVAILSFKLPYCQTSTEKGQMEEQFWHSVLFHNYLDYLAKNGYDYEESIKNQAVKEQQELLMKMLALSCKLEREFRCVELADLMTQNAVHLAIKYASRSRKLILAQKLSELAAEKAAELAETQSEEEKEEDFREKLNAGYSHTTTEWSRPRVRSQVEDAEDREDTVSEEKPESHNHGQNLFQSANSSDTPALKSGAVFSSSQGWVNPFKVVVSSKEPAVSANSTRSANILDSMNKSSRKSTSLNRMENNEKSPVIKPLTPKPRSKQASAASYFQKRTPQADKTEEVKENPKSSSSDAPAVCLQNSENQRPKTGFQMWLEENRSQILSDNPDISDETDIIKEGMIRFRVLSAEERKAWTNKAKGETASDGAEAKKRKRVVSEICETENQEETVKENLDLSKKQKALNLPANQKLSAFAFKQ", "length": 1117 }, "evidence": [ { "id": "A0A1D5PDL4", "url": "https://omabrowser.org/oma/group/A0A1D5PDL4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q01454-1", "protein_name": "DNA polymerase alpha-binding protein", "gene_name": "CTF4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVSVIDKLVFDFGGKTLVSLAPDNNTLCVANKNGLTKILKTNNPEEEPETLDSSKLVSSIKCYSNSHFLMTTMQGDALRYNIDSSQEELLARFALPLRDCCVIHSGKMAVFGGDDLELILLELDDETHKKHAIKIDEQVSQISYNSQMNILAVSMINGKVQIFSLTSTIPNKVHELNDYIVANSYDDTHRDKILSNMMDDIDKDNDNDLSETADPDENNVADPEFCAANRICTRVAWHPKGLHFALPCADDTVKIFSIKGYSLQKTLSTNLSSTKAHFIDLQFDPLRGTYIAAVDLNNKLTVWNWETSEIHYTREFKRKITNIAWKIQADSKTLDLVLGTWSGSIAIVQNLAESVVSNIPDQSVAESSTKHGLFVDSESDLENLEGNDDINKSDKLFSDITQEANAEDVFTQTHDGPSGLSEKRKYNFEDEEDFIDDDDGAGYISGKKPHNEHSYSRVHKTHSFPISLANTGKFRYMPFSPAGTPFGFTDRRYLTMNEVGYVSTVKNSEQYSITVSFFDVGRFREYHFEDLFGYDLCFLNEKGTLFGQSKTGQIQYRPHDSIHSNWTKIIPLQAGERITSVAATPVRVIVGTSLGYFRSFNQFGVPFAVEKTSPIVALTAQNYRVFSVHYSQFHGLSYSLSELGTSSKRYYKRECPLPMSLPNINSDMKKDANLDYYNFNPMGIKSLFFSSYGDPCIFGSDNTLLLLSKWRSPEESKWLPILDSNMEIWKMSGGKETTDIHVWPLALAYDTLNCILVKGKHIWPEFPLPLPSEMEIRMPVFVKSKLLEENKAILNKKNEIGADTEAEEGEEDKEIQIPVSMAAEEEYLRSKVLSELLTDTLENDGEMYGNENEVLAALNGAYDKALLRLFASACSDQNVEKALSLAHELKQDRALTAAVKISERAELPSLVKKINNIREARYEQQLK", "length": 927 }, "evidence": [ { "id": "A0A1D5PDL4", "url": "https://omabrowser.org/oma/group/A0A1D5PDL4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q494K2-1", "protein_name": "LD47422p", "gene_name": "Ctf4", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSFLRSALRYAHTNGYTGLLYTPRGEFIITCGTDGDIRHWTCISDDDPRSSCLGEFVMCIAHTGTRLLASTDRNTIHAYTFPEMDSDGILMRFTAPATCLKVSGGYTAAGSEDTTIKVLKGDTAGNETVLEGHTGPILALDLFAERKLLVSVAGDGQLKVWNFEEGKELKTIGGLPKVNSFESASLYGTPHFEPQSGELLAYAVDNEIVVLNTANWEVAFKLRDDSVSSNYSCCQFSPNGERLAAGTTKGEVSIFDVKKRKAVTVEIPPSDCNAITCLAWNLSGEVEVAFCDATGQLGTVFLGDAVDTGNGDGLVDDQAELLGDDYEFEAGDDVDTAADDGDGVSLEQLKRKVMNFADPVDHDDASNQSLDSSSRTVPAPVAPQIKLFKQQTAFQPSATPADLEHRYMAWNDVGIVTAHVEPSGDSSIDVEFHDASIHHALHISNYNQHNLASVSSGALALASNESSKLVVIALAAAGNKEWSLSLPDCESAEAVVATRFLVAVATSSSFLRIFTVMGTQREVLTIPGPMVAIAGHEHSLMVVYHSSAPSQTQQHLAAMLVNINGLSLRQEYLPVPLTPGRQLTWFGYSDTGSPSIADNMGLLQLYRRSSNAWFPICDTMKQSTSVSHNFFVVAVSEKRQIVQAVLCRGTSYPMTNPRPMLQELRMQIPLCDVEVEKSELEDALLRSSLMQMDGAEKMQKETAIKLFALACSSECETRARELIESIACTDLLQLAVKYATKRGRIHLSDRLCELLPQLEAVQEARKQQTLLGASGIAATIVLPMTPTSASQSGPKPKAIELSSAKRGTLKRLVNSPNMFKAAAASAASRPSTPDITPSPLDTQENIFGESESEVPMGKATDHRSPLNSVNPFAMKRKLGDTGVIFGSEKLKLAKK", "length": 895 }, "evidence": [ { "id": "A0A1D5PDL4", "url": "https://omabrowser.org/oma/group/A0A1D5PDL4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nuclear replication fork", "id": "GO:0043596", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043596", "evidence": [ { "database": "UniProtKB", "id": "A0A1D5PDL4", "url": "https://www.uniprot.org/uniprot/A0A1D5PDL4" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A1D5PDL4", "url": "https://www.uniprot.org/uniprot/A0A1D5PDL4" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A1D5PDL4", "url": "https://www.uniprot.org/uniprot/A0A1D5PDL4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "mitotic cell cycle", "id": "GO:0000278", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000278", "evidence": [ { "database": "UniProtKB", "id": "A0A1D5PDL4", "url": "https://www.uniprot.org/uniprot/A0A1D5PDL4" } ], "pmid": "" }, { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "A0A1D5PDL4", "url": "https://www.uniprot.org/uniprot/A0A1D5PDL4" } ], "pmid": "" }, { "name": "DNA-templated DNA replication", "id": "GO:0006261", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006261", "evidence": [ { "database": "UniProtKB", "id": "A0A1D5PDL4", "url": "https://www.uniprot.org/uniprot/A0A1D5PDL4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A1D5PDL4", "url": "https://www.uniprot.org/uniprot/A0A1D5PDL4" } ], "pmid": "" }, { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "A0A1D5PDL4", "url": "https://www.uniprot.org/uniprot/A0A1D5PDL4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1099, "end_pos": 1101, "annotation": "n_glycosylation_sequon" }, { "start_pos": 251, "end_pos": 253, "annotation": "n_glycosylation_sequon" }, { "start_pos": 480, "end_pos": 482, "annotation": "n_glycosylation_sequon" }, { "start_pos": 73, "end_pos": 75, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-A0A1D5PDL4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1123, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-A0A1D5PDL4-F1.pdb" } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 421 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1099, "end_pos": 1101 }, { "start_pos": 251, "end_pos": 253 }, { "start_pos": 480, "end_pos": 482 }, { "start_pos": 73, "end_pos": 75 } ] }, "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "prediction_tool", "mining_tool", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "prediction_tool", "mining_tool", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }