{
    "bcoid": "GLY_001190",
    "title": "Bovine Protein Canonical sequences (UniProtKB)",
    "description": "The Bovine Protein Canonical (UniProtKB) Sequences dataset contains Bos taurus [taxid:9913] canonical ...",
    "filename_list": "bovine_protein_canonicalsequences.fasta",
    "filename": "bovine_protein_canonicalsequences.fasta",
    "filetype": "fasta",
    "categories": {
        "species": [
            "Bos taurus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Canonical Protein fasta Sequences"
        ],
        "file_type": [
            "fasta"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "iconfilename": "fasta_icon_all.png",
    "sampledata": {
        "type": "html",
        "data": "<pre>\n>sp|Q5E9H2-1|1A1L1_BOVIN Isoform 1 of 1-aminocyclopropane-1-carboxylate synthase-like protein 1 OS=Bos taurus OX=9913 GN=ACCS PE=2 SV=1 CANONICAL=Q5E9H2-1\nMFTLPQKEFRMTTACPGSDSIQDLPSNKGDGLERECSRKPDQKLLKFYGVGDPAAELSSS\nSPYLSSRGSVIKWFWDSAEEGYRTYHMDEYDEDKNPSGIINLGTSENKLCFDLLSRRLSQ\nSDMLQVEPALLQYPDWRGHLFLREEVARFLSFYCRSPAPLKPENVVVLNGCASLFSALAT\nVLCEAGEAFLIPAPYYGAITQHVYLYGNVRLVCVYLDSEVTGLETRPFQLTVEKLEMALQ\nGANSEGVKVKGLILINPQNPLGDIYSPGELQEYLEFAKRHELHVMVDEVYMLSVFEESAG\nYRSVLSLERLPDPQRTHVMWATSKDFGMSGLRFGTLYTENWAVATAVASLCRYHGLSGLV\nQYQMAQLLRDHDWINQVYLPENHARLKAAHTYVSEDLRALGIPFVSRGAGFFIWVDLRKY\nLPEATFEEEVLLWRRFLENKVLLSFGKAFECKEPGWFRLVFSDKTHRLHLGMQRVRQVLE\nGQPQLADGAPPHQIQEPQGPHR\n\n\n>tr|A0A3Q1MT56-1|A0A3Q1MT56_BOVIN Isoform 1 of Leucine rich repeat containing 2 OS=Bos taurus OX=9913 GN=LRRC2 PE=4 SV=1 CANONICAL=A0A3Q1MT56-1\nMGHKVVVFDISVVRALWETRVKKHKAWQKKEAERLEKSALEKIKEEWNFVAECRRKGIPQ\nAEYCKNGFVDTSVRLLERIERRSLASQSALSKERDKRSSEFVFELSGDHWKEFPDSLKEQ\nTHLKEWHISNTLIQIIPKYIELFQAMRILDLPKNQISRLPAEIGCLKNLKELNVSFNHLK\nSIPPELGDCENLEKLDCSGNLELTELPFELSNLKQVSFVDISANKFASVPICVLRMSNLK\nWLDISNNNLSDLPQDIDRLEGLQTFLLYKNKLTYLPYALLNLKKLTLLVVSGDHLVELPT\nALCDSSTPLKFVSLKDNPLENTQCQDGDEMMESERDRQHFDKEFMKAYIEDLKERGSHLL\nYKSKYTCKISQKEKTK\n\n\n>sp|Q5E9H0-1|PLA1A_BOVIN Isoform 1 of Phospholipase A1 member A OS=Bos taurus OX=9913 GN=PLA1A PE=2 SV=1 CANONICAL=Q5E9H0-1\nMPPDFWERCFWLWGLLLWLSVGSTGDAPPTPQTNCTDFQNANLLRGTNLKVQFLLFTPLD\nPSCGQLVEESSDIQNSGFNATLGTKLVIHGFRALGTKPSWIDRFIDALLRAADANVIAVD\nWVYGSTAAYFSAVENVIKLGLEISRFLRKLLALGVSESSIHIIGISLGAHVGGMVGHFYN\nGQLGQITGLDPAGPEYTRASLEERLDPGDALFVEAIHTDTDNLGIRIPVGHVDYFINGGQ\nDQPGCPTSIYAGYSYLICDHMRAVHLYISALENSCPLVAFPCTNYKDFLAGQCLDCFNPF\nLLSCPRIGLVEQGGVKIEPLPKEVKVYLLTTSMAPYCVHHSLVEFHLQEPRNKDTCITVT\nFLSSSVTSSVKITIPRHQRVGKGVLAHPSPQCQINQVKLKLQASHRVWKKDQTTIIGRFC\nTAPLPVNDNKKMVCLPEPVNLQASETVSHDLKITCI\n\n\n>sp|Q5E9H1-1|FIBIN_BOVIN Isoform 1 of Fin bud initiation factor homolog OS=Bos taurus OX=9913 GN=FIBIN PE=2 SV=1 CANONICAL=Q5E9H1-1\nMVFLKFLWMGFLCHLCQGYFDGPLYPEMSNGTLHHYFVPDGDYEENDDPEKCQLLFRVSD\nHRRCSQGEGSSASTLLSLTLREEFTVLGRQVEDAGRVLEGISKSISYDLDGEESYGKYLR\nRESHQIGDAYSNSDKSLTELESKFKQGQEQDSRQESRLNEDFLGMLVHTRSLLKETLDIS\nVGLRDKYELLALTIRSHGTRLGRLKNDYLKV\n\n\n>tr|F6R112-1|F6R112_BOVIN Isoform 1 of Zinc finger and SCAN domain containing 2 OS=Bos taurus OX=9913 GN=ZSCAN2 PE=4 SV=1 CANONICAL=F6R112-1\nMGKQNFQGPFSVANERGGGAGLSRPLFSVPLGLEPLRLRRGRTVPAGALARGATEEVASG\nLWRARPLVETGEGCRLLREPAWRRLKVKIRSLSDSNPRTWMMASEGPRVTAPRSPVVCLP\nQKEDNQEEEVATVILEDDSWVQEAVLQEDGPETEPFPQGAGKGSPHEDVAGGPQGALGRL\nRELCRRWLRPEMHTKEQMLTVLPREIQAWLQEHRPESGEEAVALVEDLTQTLRDSDFEIQ\nSENWESSNQDIFEDVESHEMFSDVPEGEGIPQSDWESDVERDCNPQGPRRNTPRKDRGVV\nPAPGREAGQLIGLQGTYLGEKPYECPQCGKTFSRKSHLITHERTHTGEKYYKCDECGKSF\nSDGSNFSRHQTTHTGEKPYKCRDCGKSFSRSANLITHQRIHTGEKPFRCAECGKSFSRSP\nNLIAHQRTHTGEKPYSCPECGKSFGNRSSLNTHQGIHTGEKPYECKECGESFSYNSNLIR\nHQRIHTGEKPYKCPDCGQRFSQSSALITHRRTHTGEKPYQCGECGKSFSRSSNLATHRRT\nHLVEKPYKCGECGKSFSQSSSLIAHQGTHTGEKPYECRTCGESFSWSSNLLKHQRIHTGE\nKPYKCGECGKGFSQRSQLVVHQRTHTGEKPYKCLMCGKSFSRGSILVMHQRAHLGDKPYR\nCPECGKGFSWNSVLIIHQRIHTGEKPYKCPECGKGFSNSSNFITHQRTHLKEKLY\n\n\n>sp|Q5E9H7-1|DHB12_BOVIN Isoform 1 of Very-long-chain 3-oxoacyl-CoA reductase OS=Bos taurus OX=9913 GN=HSD17B12 PE=2 SV=1 CANONICAL=Q5E9H7-1\nMETALPAAGFLYWVGASTVAYLALRISCWFFTALRVWGLGHEAGVGPWLGEWAVVTGGTD\nGIGKSYAEELAKRGMKIVLISRSQDKLDQVSSEISEKFKVETKTIAVDFTSEDIYDKIKA\nSLAGLNIGVLVNNVGMSYEYPEYFLDVPDLDNTIKKLITVNALSVCKMTRLVLPGMVERS\nKGAILNISSASGMYPVPLLTIYSATKAFVDFFSQCLHEEYKSKGVIVQSVLPYYVATKLA\nKIKRPTWDKPSPETFVKSAMKTIGVQSRTNGYPIHSLVASVSASLPSWLYFKIAMYSGNS\nIRVRYLKKMKMN\n\n\n>sp|Q2TBQ7-1|A0A3Q1MT51_BOVIN Isoform 1 of Regulator of microtubule dynamics protein 2 OS=Bos taurus OX=9913 GN=RMDN2 PE=3 SV=2 CANONICAL=Q2TBQ7-1\nMPHSTNREMILGIVVGTAGISLLLLWYHKVRKPRTAMSLPKFLSLGNSLDLMTLQDEMPS\nGQGTTAIFQGRQLQILEKLNELLTHMEELKEEIRVLKEAIPKLEEYIQGELGGKVTVHKI\nSPQHRARKRRLATVQSSATSNSSEEAESEGGYVTANTDTEEQSFPVPKEFNTHVEELNLD\nALIQRADNLRVNESRKVESFELLCDHKEKFRDEIEFIWRFARAYGDMYELSTNIQEKKHY\nANIGKTLGEKAIMRAPKNGYCHLWYAVLCGYVSEFEGLQNKINYGYRFKEHLDKAIEFLP\nEEPFLYYLKGRYCYAVSKLSWIERKMAATLFGNIPSSTVQEALQNFLKVEELQPGFSKSN\nYMFMAKCYADLNQIDSAMKFCNLAVLLPCITKEDKDAQKEVKKISTSLKR\n\n\n>tr|A0A3Q1MT50-1|A0A3Q1MT50_BOVIN Isoform 1 of Ig-like domain-containing protein OS=Bos taurus OX=9913 GN= PE=4 SV=2 CANONICAL=A0A3Q1MT50-1\nMAWSPLFLTLVAVYTGSWAQAVLTQPSSVSGSLGQRVSITCSGSSSNVGNGYVSWYQLIP\nGSAPRTLIYGDTSRASGVPDRFSGSRSGNTATLTISSLQAEDEADYYCVSYDSSISGATV\nLQARGEVRQKPAVLSESGLWGQKHPLQRQPLHLSVWPKTGSRITPGNLVQKNLFTSVLIH\nPFSSFPWQQHIV\n\n\n>tr|F1N039-1|A0A3Q1MAW0_BOVIN Isoform 1 of Galactose-3-O-sulfotransferase 4 OS=Bos taurus OX=9913 GN=GAL3ST4 PE=3 SV=1 CANONICAL=F1N039-1\nMGVLSPTRTMRLWGPRSLGVALGVFMTIGFALQLLGGPFQRRLPGLQLRHSWASSLGPAA\nPSCPPRQHLVFLKTHKSGSSSVLSLLHRYGDRHGLRFALPARYQFGYPRLFQASRVKGYR\nPQSGGTQPPFHILCHHMRFNLKEVLQVMPSDSFFFSIVRDPAALARSAFSYYKSTSSAFR\nKAPSLAAFLANPRAFYRPGARGDHYARNLLWFDFGLPFPPELRTKRGNPHVSRDPNPPQL\nPSGAGPPAHTLDPNALFHPVPTVADGHSQMSSPASLDLGSSSFIQWNLAWLDSVFDLVLV\nAEYFDESLVLLADALCWGLDDVVGFMHNAQAGGGQDRSTIDDGGLTTEERQLTARARAWN\nNLDWALYVHFNRSLWARIKQYGQSRLDSAVAELRARREALAKHCLVGGEALDPKYITDRR\nFRPFQFGSGKVLGYVLRSGLSLQDQEECERLATPELQYKDKLDAKQFPPTVSLPLKTSRR\nPSP\n\n\n</pre>"
    },
    "readme": "Name\n   - Bovine Protein Canonical sequences (UniProtKB)\n\nVersion\n   - v-2.7.1\n\nCreated on\n  - 2024-10-30T17:14:33\n\nModified on\n   - 2024-10-30T17:22:29.807Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Bovine Protein Canonical (UniProtKB) Sequences dataset contains Bos taurus [taxid:9913] canonical protein fasta sequences from the UniProtKB database. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - protein sequence\n   - fasta\n   - UniProtKB canonical accessions\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB fasta sequence for all bovine canonical accessions data from the triplestore containing triples from nt file and extracts it into a dataset as fasta format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-bos-taurus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2024_09_19/uniprot-proteome-bos-taurus.nt\n   Output Subdomain\n      Name: bovine_protein_canonicalsequences.fasta\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/bovine_protein_canonicalsequences.fasta\n      Name: bovine_protein_canonicalsequences.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/bovine_protein_canonicalsequences.stat.csv\n\nFields\n      Name: \"sequence\"\n     Description: \"Amino acid sequence\"\n      Unique Values: \"26943\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/bovine_protein_canonicalsequences.fasta"
}