{
    "bcoid": "GLY_001175",
    "title": "Bovine O-GlcNAc Glycosylation Citations (MCW)",
    "description": "The Bovine O-GlcNAc Glycosylation Citations (MCW) dataset contains details of the publication present ...",
    "filename_list": "bovine_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv",
    "filename": "bovine_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Bos taurus"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Protein Citations O-GlcNAc (MCW)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "A0AAA9TH40-1...",
                "Mitochondria..."
            ],
            [
                "E1BQ16-1...",
                "Bicyclic Pic..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                }
            ],
            [
                "A0AAA9TH40-1",
                "Mitochondrial O-GlcNAc Transferase (mOGT) Regulates Mitochondrial Structure, Function, and Survival in HeLa Cells.",
                "The Journal of biological chemistry",
                "2017 Mar 17",
                "Sacoman JL, Dagda RY, Burnham-Marusich AR, Dagda RK, Berninsone PM",
                "protein_xref_pubmed",
                "28100784",
                "protein_xref_oglcnac_db",
                "A0AAA9TH40",
                "G49108TO"
            ],
            [
                "E1BQ16-1",
                "Bicyclic Picomolar OGA Inhibitors Enable Chemoproteomic Mapping of Its Endogenous Post-translational Modifications.",
                "Journal of the American Chemical Society",
                "2022-01-19",
                "Gonz\u00e1lez-Cuesta Manuel, Sidhu Peter, Ashmus Roger A, Males Alexandra, Proceviat Cameron, Madden Zarina, Rogalski Jason C, Busmann Jil A, Foster Leonard J, Garc\u00eda Fern\u00e1ndez Jos\u00e9 M, Davies Gideon J, Ortiz Mellet Carmen, Vocadlo David J",
                "protein_xref_pubmed",
                "34985906",
                "protein_xref_oglcnac_db",
                "E1BQ16",
                "G49108TO"
            ]
        ]
    },
    "readme": "Name\n   - Bovine O-GlcNAc Glycosylation Citations (MCW)\n\nVersion\n   - v-2.7.1\n\nCreated on\n  - 2020-07-15T16:28:21.779974\n\nModified on\n   - 2024-05-17T11:24:03.245Z\n\nCreated by\n   -  [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Stephanie Olivier-Van Stichelen [solivier@mcw.edu], Eugenia Wulff-Fuentes [ewulff@mcw.edu],  Rex R. Berendt [rberendt@mcw.edu],  Logan Massman [lmassman@mcw.edu], Laura Danner [ldanner@mcw.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The Bovine O-GlcNAc Glycosylation Citations (MCW) dataset contains details of the publication present in the dataset Bovine O-GlcNAc Glycosylation Sites (MCW)  https://data.glygen.org/GLY_000517, contributed by Stephanie Olivier's group.\n\nDescription Domain\n   Keywords\n   - O-GlcNAc\n   - Publications\n   - Citations\n   - PubMed\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset. \n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: bovine_proteoform_glycosylation_sites_oglcnac_mcw.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/bovine_proteoform_glycosylation_sites_oglcnac_mcw.csv\n   Output Subdomain\n      Name: bovine_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/bovine_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv\n      Name: bovine_proteoform_citations_glycosylation_sites_oglcnac_mcw.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/bovine_proteoform_citations_glycosylation_sites_oglcnac_mcw.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"74\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"23\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"16\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"23\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"23\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"23\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"74\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/bovine_proteoform_citations_glycosylation_sites_oglcnac_mcw.csv"
}