{
    "bcoid": "GLY_001076",
    "title": "Arabidopsis Protein Sequence Info (UniProtKB)",
    "description": "The Arabidopsis Protein Sequence Info (UniProtKB) dataset contains Arabidopsis thaliana [taxid:3702] ...",
    "filename_list": "arabidopsis_protein_sequenceinfo.csv",
    "filename": "arabidopsis_protein_sequenceinfo.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Arabidopsis thaliana"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "All Protein Sequence Info"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q58FU4-1...",
                "Q45GI1-1..."
            ],
            [
                "P42737-1...",
                "A8MQY4-1..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "uniprotkb_is..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_isoform_ac"
                },
                {
                    "type": "string",
                    "label": "protein_existence"
                },
                {
                    "type": "string",
                    "label": "sequence_version"
                },
                {
                    "type": "string",
                    "label": "sequence_header"
                }
            ],
            [
                "Q58FU4-1",
                "Q45GI1-1",
                "2",
                "1",
                "tr|Q45GI1-1|Q45GI1_ARATH Computationally mapped isoform of HMG-box (High mobility group) DNA-binding family protein  OS=Arabidopsis thaliana OX=3702 GN= PE=2 SV=1 CANONICAL=Q58FU4-1"
            ],
            [
                "P42737-1",
                "A8MQY4-1",
                "1",
                "1",
                "tr|A8MQY4-1|A8MQY4_ARATH Computationally mapped isoform of Carbonic anhydrase  OS=Arabidopsis thaliana OX=3702 GN=CA2 PE=1 SV=1 CANONICAL=P42737-1"
            ]
        ]
    },
    "readme": "Name\n   - Arabidopsis Protein Sequence Info (UniProtKB)\n\nVersion\n   - v-2.7.1\n\nCreated on\n  - \n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Arabidopsis Protein Sequence Info (UniProtKB) dataset contains Arabidopsis thaliana [taxid:3702] UniProtKB protein fasta sequence information that includes sequence version and fasta header. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - protein sequence info\n   - fasta header\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB sequence for all human isoform accessions data from the triplestore containing triples from nt file and extracts it into a dataset in a fasta format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-arabidopsis-thaliana.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2024_09_19/uniprot-proteome-arabidopsis-thaliana.nt\n   Output Subdomain\n      Name: arabidopsis_protein_sequenceinfo.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/arabidopsis_protein_sequenceinfo.csv\n      Name: arabidopsis_protein_sequenceinfo.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/arabidopsis_protein_sequenceinfo.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"27448\"\n      Name: \"uniprotkb_isoform_ac\"\n     Description: \"\"UniProtKB isoform that includes the canonical accession and other isoforms generated by alternative splicing\"\n      Unique Values: \"41586\"\n      Name: \"protein_existence\"\n     Description: \"In UniProtKB there are 5 types of evidence for the existence of a protein: 1. Experimental evidence at protein level; 2. Experimental evidence at transcript level; 3. Protein inferred from homology; 4. Protein predicted; 5. Protein uncertain\"\n      Unique Values: \"5\"\n      Name: \"sequence_version\"\n     Description: \"The version of the protein fasta sequence for a given accession in UniProtKB \"\n      Unique Values: \"5\"\n      Name: \"sequence_header\"\n     Description: \"The FASTA header for the UniProtKB protein FASTA sequences\"\n      Unique Values: \"53405\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/arabidopsis_protein_sequenceinfo.csv"
}