{
    "bcoid": "GLY_001057",
    "title": "Arabidopsis Protein Enzyme Annotation (UniProtKB)",
    "description": "The Arabidopsis Protein Enzyme Annotation (UniProtKB) dataset contains Arabidopsis thaliana [taxid:3702] ...",
    "filename_list": "arabidopsis_protein_enzyme_annotation_uniprotkb.csv",
    "filename": "arabidopsis_protein_enzyme_annotation_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Arabidopsis thaliana"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "enzyme annotation"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "F4IK69-1...",
                "2.3.2.27..."
            ],
            [
                "F4IK69-1...",
                "2.3.2.27..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "enzyme_ec..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "enzyme_ec"
                },
                {
                    "type": "string",
                    "label": "enzyme_activity"
                }
            ],
            [
                "F4IK69-1",
                "2.3.2.27",
                "S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine."
            ],
            [
                "F4IK69-1",
                "2.3.2.27",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Arabidopsis Protein Enzyme Annotation (UniProtKB)\n\nVersion\n   - v-2.7.1\n\nCreated on\n  - 2024-07-08T14:41:55\n\nModified on\n   - 2024-07-08T14:45:54.034Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Arabidopsis Protein Enzyme Annotation (UniProtKB) dataset contains Arabidopsis thaliana [taxid:3702] enzyme annotations for UniProtKB canonical accessions. The dataset contains ec numbers and enzyme activity that describes the enzymatic reactions. If you use this dataset please give proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - enzyme annotation\n   - enzyme \n   - UniProtKB\n   - enzyme activity\n   - EC number\n\n   Pipeline Steps\n   - Step-1: The script extracts the enzyme annotation triples from the triplestore for the UniProtKB canonical sequnces asnd extracts as a dataset in a csv format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-arabidopsis-thaliana.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2024_09_19/uniprot-proteome-arabidopsis-thaliana.nt\n   Output Subdomain\n      Name: arabidopsis_protein_enzyme_annotation_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/arabidopsis_protein_enzyme_annotation_uniprotkb.csv\n      Name: arabidopsis_protein_enzyme_annotation_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/arabidopsis_protein_enzyme_annotation_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"6369\"\n      Name: \"enzyme_ec\"\n     Description: \"Enzyme Commision number assigned to an enzyme by Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n      Unique Values: \"1321\"\n      Name: \"enzyme_activity\"\n     Description: \"The catalytic reaction activity of an enzyme in UniProtKB\"\n      Unique Values: \"1202\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/arabidopsis_protein_enzyme_annotation_uniprotkb.csv"
}