{
    "bcoid": "GLY_001030",
    "title": "Chicken Protein PTM Annotation (UniProtKB)",
    "description": "The Chicken Protein PTM Annotation (UniProtKB) dataset contains Gallus gallus [taxid:9031] PTM annotations ...",
    "filename_list": "chicken_protein_ptm_annotation_uniprotkb.csv",
    "filename": "chicken_protein_ptm_annotation_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "PTM annotation"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "Q8AYD0-1...",
                "protein_xref..."
            ],
            [
                "Q8AYD0-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "eco_id"
                },
                {
                    "type": "string",
                    "label": "ptm_annotation"
                }
            ],
            [
                "Q8AYD0-1",
                "protein_xref_uniprotkb",
                "Q8AYD0",
                "ECO_0000269",
                "N-glycosylated."
            ],
            [
                "Q8AYD0-1",
                "protein_xref_pubmed",
                "21269602",
                "ECO_0000269",
                "N-glycosylated."
            ]
        ]
    },
    "readme": "Name\n   - Chicken Protein PTM Annotation (UniProtKB)\n\nVersion\n   - v-2.7.1\n\nModified on\n   - 2024-05-21T14:49:08.136Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken Protein PTM Annotation (UniProtKB) dataset contains Gallus gallus [taxid:9031] PTM annotations for UniProtKB canonical accessions. The annotation is the curated statements of mainly about glycosylation and phosphorylation. If you use this dataset please give proper attribution to UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - ptm annotation\n   - glycosylation\n   - phosphorylation\n\n   Pipeline Steps\n   - Step-1: The script extracts the ptm annotation strings from the triplestore for the UniProtKB canonical sequnces asnd extracts as a dataset in a csv format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-gallus-gallus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2024_09_19/uniprot-proteome-gallus-gallus.nt\n   Output Subdomain\n      Name: chicken_protein_ptm_annotation_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/chicken_protein_ptm_annotation_uniprotkb.csv\n      Name: chicken_protein_ptm_annotation_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/chicken_protein_ptm_annotation_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"106\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"2\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"235\"\n      Name: \"eco_id\"\n     Description: \"Evidence & Conclusion Ontology (ECO) identifier\"\n      Unique Values: \"3\"\n      Name: \"ptm_annotation\"\n     Description: \"The Post Translational Modifiaction (PTM) annotation in UniProtKB that provides more context and description about the PTMs occuring on a proein\"\n      Unique Values: \"99\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/chicken_protein_ptm_annotation_uniprotkb.csv"
}