{
    "bcoid": "GLY_001024",
    "title": "Chicken Glycohydrolases",
    "description": "The Chicken Glycohydrolases dataset contains a list of Gallus gallus [taxid:9301] glycohydrolases derived ...",
    "filename_list": "chicken_protein_glycohydrolase.csv",
    "filename": "chicken_protein_glycohydrolase.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "Glycohydrolases"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "P0C7A1-1...",
                "Gallus gallu..."
            ],
            [
                "P27042-1...",
                "Gallus gallu..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "species..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "species"
                },
                {
                    "type": "string",
                    "label": "status"
                },
                {
                    "type": "string",
                    "label": "gene_symbol"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_protein_name"
                },
                {
                    "type": "string",
                    "label": "ec_number"
                },
                {
                    "type": "string",
                    "label": "brenda_ec_number"
                },
                {
                    "type": "string",
                    "label": "cazy_gh_family"
                },
                {
                    "type": "string",
                    "label": "interpro_id"
                },
                {
                    "type": "string",
                    "label": "pfam_ac"
                },
                {
                    "type": "string",
                    "label": "go_molecular_function"
                }
            ],
            [
                "P0C7A1-1",
                "Gallus gallus (Chicken)",
                "reviewed",
                "ENGASE",
                "Cytosolic endo-beta-N-acetylglucosaminidase (ENGase) (EC 3.2.1.96)",
                "3.2.1.96",
                "",
                "",
                "IPR001073|IPR032979|IPR005201|IPR008983",
                "PF00386|PF03644",
                "beta-N-acetylglucosaminidase activity [GO:0016231]| hydrolase activity [GO:0016787]| hydrolase activity, hydrolyzing O-glycosyl compounds [GO:0004553]| mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity [GO:0033925]"
            ],
            [
                "P27042-1",
                "Gallus gallus (Chicken)",
                "reviewed",
                "LYSG",
                "Lysozyme g (EC 3.2.1.17) (1,4-beta-N-acetylmuramidase) (Goose-type lysozyme)",
                "3.2.1.17",
                "",
                "GH23",
                "IPR002152|IPR023346",
                "",
                "lysozyme activity [GO:0003796]"
            ]
        ]
    },
    "readme": "Name\n   - Chicken Glycohydrolases\n\nVersion\n   - v-2.7.1\n\nCreated on\n  - 2019-01-23T17:21:05.892318\n\nModified on\n   - 2024-05-21T14:21:00.920Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Jeet Vora [jeetvora@gwu.edu]\n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken Glycohydrolases dataset contains a list of Gallus gallus [taxid:9301] glycohydrolases derived from UniProtKB database using advanced search and other databases including CAZy, InterPro and Pfam. If you use this dataset please provide proper attribution to UniProtKB and GlyGen.\n\nDescription Domain\n   Keywords\n   - glycohydrolase\n   - glycosidase\n   - EC Number\n   - CAZy\n\n   Pipeline Steps\n   - Step-1: The script maps and replaces the UniProtKb accession to the UniProtKB canonical accession\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: chicken_protein_glycohydrolase.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/compiled/chicken_protein_glycohydrolase.csv\n      Name: chicken_protein_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/chicken_protein_masterlist.csv\n   Output Subdomain\n      Name: chicken_protein_glycohydrolase.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/chicken_protein_glycohydrolase.csv\n      Name: chicken_protein_glycohydrolase.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/chicken_protein_glycohydrolase.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"6\"\n      Name: \"species\"\n     Description: \"Species of the protein.\"\n      Unique Values: \"1\"\n      Name: \"status\"\n     Description: \"Status of the protein record in UniProtKB database that can be reviewed for UniProtKB/Swiss-Prot entry or unreviewed for UniProtKB/TrEMBL entry\"\n      Unique Values: \"1\"\n      Name: \"gene_symbol\"\n     Description: \"\"Official gene name/symbol assigned to the gene. Human gene names/symbols are approved by the HUGO Gene Nomenclature Committee (HGNC)\"\n      Unique Values: \"6\"\n      Name: \"uniprotkb_protein_name\"\n     Description: \"Name of the protein in UniProtKB database\"\n      Unique Values: \"6\"\n      Name: \"ec_number\"\n     Description: \"Enzyme Commision number assigned to an enzyme by Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n      Unique Values: \"5\"\n      Name: \"brenda_ec_number\"\n     Description: \"Enzyme Commission (EC) number assigned to enzyme in BRENDA database\"\n      Unique Values: \"3\"\n      Name: \"cazy_gh_family\"\n     Description: \"\"\n      Unique Values: \"4\"\n      Name: \"interpro_id\"\n     Description: \"InterPro Identifier\"\n      Unique Values: \"6\"\n      Name: \"pfam_ac\"\n     Description: \"Accession assigned to the protein family in the Pfam database\"\n      Unique Values: \"6\"\n      Name: \"go_molecular_function\"\n     Description: \"\"The elemental activities of a gene product at the molecular level\"\n      Unique Values: \"6\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/chicken_protein_glycohydrolase.csv"
}