{
    "bcoid": "GLY_001016",
    "title": "Human Glycosylation Diabetes Glycomics Study Citations",
    "description": "The dataset contains publication information of the PMIDs present in the Human Glycosylation Sites Diabetes ...",
    "filename_list": "human_proteoform_citations_glycosylation_sites_diabetes_glycomic.csv",
    "filename": "human_proteoform_citations_glycosylation_sites_diabetes_glycomic.csv",
    "filetype": "csv",
    "categories": {
        "species": [
            "Homo sapiens"
        ],
        "molecule": [
            "Proteoform"
        ],
        "tag": [
            "Diabetes glycomic study citations"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "minitable": {
        "content": [
            [
                "...",
                "Increased pl..."
            ],
            [
                "...",
                "Increased pl..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                }
            ],
            [
                "",
                "Increased plasma N-glycome complexity is associated with higher risk of type 2 diabetes.",
                "Diabetologia",
                "2017-12",
                "Keser Toma, Gornik Ivan, Vu\u010dkovi\u0107 Frano, Selak Najda, Pavi\u0107 Tamara, Luki\u0107 Edita, Gudelj Ivan, Ga\u0161parovi\u0107 Hrvoje, Bio\u010dina Bojan, Tilin Therese, Wennerstr\u00f6m Annika, M\u00e4nnist\u00f6 Satu, Salomaa Veikko, Havulinna Aki, Wang Wei, Wilson James F, Chaturvedi Nish, Perola Markus, Campbell Harry, Lauc Gordan, Gornik Olga",
                "protein_xref_pubmed",
                "28905229",
                "protein_xref_glygen_ds",
                "GLY_000960",
                "G59722IA"
            ],
            [
                "",
                "Increased plasma N-glycome complexity is associated with higher risk of type 2 diabetes.",
                "Diabetologia",
                "2017-12",
                "Keser Toma, Gornik Ivan, Vu\u010dkovi\u0107 Frano, Selak Najda, Pavi\u0107 Tamara, Luki\u0107 Edita, Gudelj Ivan, Ga\u0161parovi\u0107 Hrvoje, Bio\u010dina Bojan, Tilin Therese, Wennerstr\u00f6m Annika, M\u00e4nnist\u00f6 Satu, Salomaa Veikko, Havulinna Aki, Wang Wei, Wilson James F, Chaturvedi Nish, Perola Markus, Campbell Harry, Lauc Gordan, Gornik Olga",
                "protein_xref_pubmed",
                "28905229",
                "protein_xref_glygen_ds",
                "GLY_000960",
                "G62220SM"
            ]
        ]
    },
    "readme": "Name\n   - Human Glycosylation Diabetes Glycomics Study Citations\n\nVersion\n   - v-2.7.1\n\nModified on\n   - 2024-06-04T13:25:08.357Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Olga Gornik [ogornik@pharma.hr], Nadja Rudman [najda.rudman@gmail.com]\n\nChecksum\n   - \n\nUsability Domain\n   - The dataset contains publication information of the PMIDs present in the Human Glycosylation Sites Diabetes Glycomics Study dataset (https://data.glygen.org/GLY_000960).\n\nDescription Domain\n   Keywords\n   - Publications\n   - Citations\n   - PubMed\n   - glycomics\n   - Diabetes\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMIDs from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: human_proteoform_glycosylation_sites_diabetes_glycomic.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_proteoform_glycosylation_sites_diabetes_glycomic.csv\n   Output Subdomain\n      Name: human_proteoform_citations_glycosylation_sites_diabetes_glycomic.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_proteoform_citations_glycosylation_sites_diabetes_glycomic.csv\n      Name: human_proteoform_citations_glycosylation_sites_diabetes_glycomic.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/human_proteoform_citations_glycosylation_sites_diabetes_glycomic.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"1\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"1\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"1\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"1\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"1\"\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"39\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/human_proteoform_citations_glycosylation_sites_diabetes_glycomic.csv"
}