{
    "bcoid": "GLY_001005",
    "title": "Chicken Protein Isoform sequences (UniProtKB)",
    "description": "The Chicken Protein Isoform sequences (UniProtKB) dataset contains Gallus gallus [taxid:9301] protein ...",
    "filename_list": "chicken_protein_allsequences.fasta",
    "filename": "chicken_protein_allsequences.fasta",
    "filetype": "fasta",
    "categories": {
        "species": [
            "Gallus gallus"
        ],
        "molecule": [
            "Protein"
        ],
        "tag": [
            "All Protein Sequences"
        ],
        "file_type": [
            "fasta"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ]
    },
    "iconfilename": "fasta_icon_all.png",
    "sampledata": {
        "type": "html",
        "data": "<pre>\n>tr|A0A8V0YQD0-1|A0A8V0YQD0_CHICK Isoform 1 of RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=3 SV=1 CANONICAL=A0A8V0YQD0-1\nMVLYLFDLSAFAKAPNRLRVRGLVPCSCSVLGVGSAAAGAHGEEPLCISSASASSRLMKY\nFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGA\nKPRSIQTGFTIGVQQLHPAFIQRPFGLTPHYVYPQAIIQPSVVIPTPVQSIASPYIDYTA\nASQAYSQYTTAAYDQYPYAASPAAGFVGYGYTGAVQPPITASTPAAPATAFVQYQPQQLQ\nPDRMQ\n\n\n>tr|A0A8V0ZLE6-1|A0A8V0ZLE6_CHICK Isoform 1 of Ankyrin repeat domain 2 OS=Gallus gallus OX=9031 GN=ANKRD2 PE=4 SV=1 CANONICAL=A0A8V0ZLD9-1\nMWKKRRSSLTRSWRRRKRKRRSPMSPQRLKGDGPREPLAVERMSTPELEEEKRQGPRNRG\nIEAIKGQDRVRRSSVDLRREIIDVGSIQRLIELRKQRRKRREERAATPEPTPPPEPEEIE\nGPVEPEDFLRAAVQGKIRVIEKFLADGGPPDTCDEFHRTALHRSSLEGHMDILQKLLDSG\nATVDFRDRLDSAAVHWACRGGHLDAVKLLQDRGADLNLKDKLLSTPLHVATRTGHLDIVE\nHLIHCGVDINSPDREGDTALHDATRLSRYKIIKVLILHGADMMARNLAGKTPTDLVQQWQ\nVDTRQALETKERPQEETEVPA\n\n\n>tr|A0A8V0YEV0-1|A0A8V0YEV0_CHICK Isoform 1 of Wee1-like protein kinase OS=Gallus gallus OX=9031 GN= PE=3 SV=1 CANONICAL=A0A8V0YEV0-1\nMCWGGRGAICRVAGGFLGIPLLLQLQARVRSISSILYGEMDDWENNDFIQRLDFSSCGEE\nGEDRSINEEDTLSSSPIKHCDFQKWNSPLPATPHRKLSEIFLSRTKSWVSPTLKSSPGVS\nRTHGNAETPLHITWKKLQLCDTPHTPKSLLSKTAFPSPGAKVPPKGFRHLRFTPGADLDD\nSTQASLVNINPFTPESYRQMLFLPNGKRKAREIRNPDLRGQVKQELLTKRCPLKDSNMVS\nRYQKEFLELERIGVGEFGSVYKCIKRLDGCVYAIKRSKRPLAGSSDEQLALREVYAHAVL\nGHHPHVVRYYSAWAEDDHMIIQNEHCNGGSLQDVLLENAKRGQYFPEAKLKEILLQVSMG\nLKYIHNSGLVHLDIKPSNIFICHKLVVEGQAGQEESDSDDEFSSGVMYKIGDLGHVTSIA\nNPQVEEGDRRFLANEILQEQYFHLPKADIFALALTIALAAGAGPLPHNGAMWHHIRKGNI\nPSIPQKLPNGFIELLKLMIHPDPMERPSATALTKHPILRPSLGKAVQLQKQLNVEKCKTA\nMLERELKAARLAQTLMKDQPLGNANLQESETSPKKNNKRLVGGKNCRSFSFTVGY\n\n\n>tr|A0A8V0YEV5-1|A0A8V0YEV0_CHICK Isoform 1 of Wee1-like protein kinase OS=Gallus gallus OX=9031 GN= PE=3 SV=1 CANONICAL=A0A8V0YEV0-1\nMQEDKLRPKKEEAPDPSVADPAFMQARVRSISSILYGEMDDWENNDFIQRLDFSSCGEEG\nEDRSINEEDTLSSSPIKHCDFQKWNSPLPATPHRKLSEIFLSRTKSWVSPTLKSSPGVSR\nTHGNAETPLHITWKKLQLCDTPHTPKSLLSKTAFPSPGAKVPPKGFRHLRFTPGADLDDS\nTQASLVNINPFTPESYRQMLFLPNGKRKAREIRNPDLRGQVKQELLTKRCPLKDSNMVSR\nYQKEFLELERIGVGEFGSVYKCIKRLDGCVYAIKRSKRPLAGSSDEQLALREVYAHAVLG\nHHPHVVRYYSAWAEDDHMIIQNEHCNGGSLQDVLLENAKRGQYFPEAKLKEILLQVSMGL\nKYIHNSGLVHLDIKPSNIFICHKLVVEGQAGQEESDSDDEFSSGVMYKIGDLGHVTSIAN\nPQVEEGDRRFLANEILQEQYFHLPKADIFALALTIALAAGAGPLPHNGAMWHHIRKGNIP\nSIPQKLPNGFIELLKLMIHPDPMERPSATALTKHPILRPSLGKAVQLQKQLNVEKCKTAM\nLERELKAARLAQTLMKDQPLGNANLQESETSPKKNNKRLVGGKNCRSFSFTVGY\n\n\n>tr|A0A8V0XXY1-1|A0A8V0XXY1_CHICK Isoform 1 of Interleukin 11 receptor subunit alpha OS=Gallus gallus OX=9031 GN=IL11RA PE=3 SV=1 CANONICAL=A0A8V0XXW0-1\nMHVEMAAGLDGPLMHSHIRGLGRVMVFLAAALASASLTIPEGWGEEGVQYGQLGTDVTLS\nCIGARTGSLVQWRRDGAMALPEGSAIHQGALVLPHASLAAAGTYSCHDEDGSLLHAVSLQ\nLGHLPGVPFVSCRASDYENFSCSWTSSLETFLPTRYITTYRKKSLTGEEKRRNKSGHVGP\nCLQDPARTGTCTVHRSEFWSSYRLNITEVNPLGSSFRLLDVTMQAIIKPDPPEGLVVEPV\nPLAPRRLHVSWKYPASWPKEPHFQLRFRLQYRPVIHRSWSVVETVNLSEVITDAFAGLEH\nVVQVSAKDFLDAGNWSEWSAEARATPVRDPATMVSEETTTDVSLGSLAEEPSQAPNPEPI\nNRSDPLENTAILVSLGIFAFFVLAAVLVIAILIWLRVRKHSKDETKPHNFLVAATHLKAL\nPRTQILP\n\n\n>tr|A0A8V0ZIX6-1|A0A8V0ZIX6_CHICK Isoform 1 of Ovochymase 2 OS=Gallus gallus OX=9031 GN=OVCH1 PE=1 SV=1 CANONICAL=A0A8V0ZIX6-1\nMCITSSKLLLLLLGVVCITESRAVPHILQKDPKCGQKVHETKPWSYFNLFTRIVGGNQVK\nQGSHPWQVSLKRREKHFCGGTIVSAQWVVTAAHCVSDRADSTHFDCTYYTRKSEDERNLL\nKYLNVTAGEHDLRIRENGEQTLPVKYIIKHPNFDPRRPMNYDIALLKLDGTFNFSSSVLP\nACLPDPGEKFEAGYICTACGWGRLRENGVLPQVLYEVNLPILNSMECSRALSTLRKPIQG\nDTILCAGFPDGGKDACQGDSGGPLLCRRKHGAWILAGVISWGMGCARGWRGNEMKRHYER\nGSPGIFTDLSAVLSWIQENMSADLKMKSSTPFCSVQDGKLTDSEGELNFPGGSEQFYQNH\nQLCIWTLFVPEGNYILLHFSHFDIEPETFCDYDSLSVYSKDDRLVGKFCGGDLPLPILIG\nSNNIRLKFVSDNKDYGTGFSMTYKALTTGILPDSGCESLAVLFEEGVLQSMHYPENYSNL\nAVCQWIICAPEDHVIKLTYQTFEVEESEDCSYDAVTVYEDAGKEEEIAKSCGFVLPAPVL\nSSSSMMLVVFHSDETETFEGFRATITFVHVTDLDTLDSASVEVFENTDMTEEEIQVTTDD\nVCGMPSNQPRFIFSRIIGGEEAVPHSWPWQVSIQISDQHICGGAVLAKEWVITAAHCFNS\nKELYRDLWMVVTGIHDLTEQEYRQKRSVKQYIIHPSFNKTTMDSDIALLQLAEPLEFNHY\nVHPVCLPAKEEVVQPSSVCIITGWGAQEEDREKSKKLHQLEVPILMLEACQTYYINLPSR\nVTQRMICAGFPLEEGKDSCTGDSGGPLVCPSEDGSGFYTLHGITSWGLGCGRKSYPGVYT\nNVGVFVDWIKQSINSSDLPIFMV\n\n\n>tr|A0A8V0ZRB2-1|A0A8V0ZIX6_CHICK Isoform 1 of Ovochymase 2 OS=Gallus gallus OX=9031 GN=OVCH1 PE=1 SV=1 CANONICAL=A0A8V0ZIX6-1\nMCITSSKLLLLLLGVVCITESRAVPHILQKDPKCGQKVHETKPWSYFNLFTRIVGGNQVK\nQGSHPWQVSLKRREKHFCGGTIVSAQWVVTAAHCVSDRNLLKYLNVTAGEHDLRIRENGE\nQTLPVKYIIKHPNFDPRRPMNYDIALLKLDGTFNFSSSVLPACLPDPGEKFEAGYICTAC\nGWGRLRENGVLPQVLYEVNLPILNSMECSRALSTLRKPIQGDTILCAGFPDGGKDACQGD\nSGGPLLCRRKHGAWILAGVISWGMGCARGWRGNEMKRHYERGSPGIFTDLSAVLSWIQEN\nMSADLKMKSSTPFCSVQDGKLTDSEGELNFPGGSEQFYQNHQLCIWTLFVPEGNYILLHF\nSHFDIEPETFCDYDSLSVYSKDDRLVGKFCGGDLPLPILIGSNNIRLKFVSDNKDYGTGF\nSMTYKALTTGILPDSGCESLAVLFEEGVLQSMHYPENYSNLAVCQWIICAPEDHVIKLTY\nQTFEVEESEDCSYDAVTVYEDAGKEEEIAKSCGFVLPAPVLSSSSMMLVVFHSDETETFE\nGFRATITFVHVTDLDTLDSASVEVFENTDMTEEEIQVTTDDVCGMPSNQPRFIFSRIIGG\nEEAVPHSWPWQVSIQISDQHICGGAVLAKEWVITAAHCFNSKELYRDLWMVVTGIHDLTE\nQEYRQKRSVKQYIIHPSFNKTTMDSDIALLQLAEPLEFNHYVHPVCLPAKEEVVQPSSVC\nIITGWGAQEEDREKSKKLHQLEVPILMLEACQTYYINLPSRVTQRMICAGFPLEEGKDSC\nTGDSGGPLVCPSEDGSGFYTLHGITSWGLGCGRKSYPGVYTNVGVFVDWIKQSINSSGMY\nGSKPKQLSKSFGYC\n\n\n>tr|A0A8V0XXY0-1|A0A8V0XXY0_CHICK Isoform 1 of Malonyl-CoA decarboxylase OS=Gallus gallus OX=9031 GN=MLYCD PE=1 SV=1 CANONICAL=A0A8V0XXY0-1\nMVVTGEKDPGITGLHSERLKERALRTIKALRKEGQPTAPVKEQPNSAFSRPPHSRWRRSA\nSHAAPHSPALPLLASDWRVRGASQSARPLPLRGRCRGLAQLEAAVGGGMSRLVPCLRSRL\nLLCECRAVSRGLLRVSLAAGPCRGTAGCGAASDVSMEELLSRSVPPLPPYETKEKAPPPA\nELRGAEFVRYYRGLPAGPPRAELLTRLARDFGVDHGRVAEFSAKVLQAREQQRELGALLQ\nAEDRLRYYLNPRYRGLFQHLGRLEGGLRFLVELRGDLVEGLASKAVDGPHVKEMSGVLKN\nMLSEWFSTGFLNLERVTWQSPCEVLQKISDSEAVHPVRNWVDMKRRVGSYRRCYFFSHCA\nIPGEPLIVLHVALTSDISSSIQAIVKEVEPLETEDADKITTAIFYSISLTQQGLQGVELG\nTYLIKRVVKELQKELPQIKTFSTLSPIPGFTKWLVGLLSSQTKELEKNELFTESERQELS\nQITGDCTTETLKKLLNNNEWVRSEKLVNALHSPLMRLCAWYLYGEKHRGYALNPVANFHL\nQNGSVLWRINWMADTSPRGIAAACGMMVNYRYFLEDTASNSAAYLGTKAIKASEQVLSLV\nSQFQQNSKL\n\n\n>tr|A0A8V0XA18-1|A0A8V0XA18_CHICK Isoform 1 of Nyctalopin OS=Gallus gallus OX=9031 GN=NYX PE=4 SV=1 CANONICAL=A0A8V0XA18-1\nMGSTHSLLSVILWVPHVHAVWACVRSCPANCVCTQERSCSVLCDRAGLGQIPSEFPCEAS\nSINLDKNSIKFLSERAFGTLPSLKSLSLNHNNISFITPGAFKGLPSLTELKMAHNEYIRY\nLHTRTFTALRRLVKLDLADCNLFNIPDRIFIELPSLQELFCFQNNFRRIPGAIRGMENLT\nHVYLERNRIEAVAYNSLQGLTKLKYLNLQDNRINVVHERAFQGCRKMEYLYLNDNLISEL\nPENSFDGLRCLKMLNLGGNFLRNVSNTWFRDLVELEVLYLDRNRINYIEEGAFENLTSLV\nSLHLNSNNLTTLPFSVFQPVYFLGRLYLFRNPWECDCRIEWLKEWMENYRLVRDIPCASP\nSSVAGIDLMDVLYDRSPEGYCLDPVELNVTSDSPTPSSKPFSTTESKFNSLISKLLLQMG\nLPEEVANTTEVFSNATQLDGLADGVTSGTREDSSKAISFSFHLPALLTVVIFQSK\n\n\n</pre>"
    },
    "readme": "Name\n   - Chicken Protein Isoform sequences (UniProtKB)\n\nVersion\n   - v-2.7.1\n\nCreated on\n  - 2019-01-23T17:21:05.921192\n\nModified on\n   - 2024-05-21T14:53:43.709Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Jingyue Wu [jingyue.wu@email.gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Chicken Protein Isoform sequences (UniProtKB) dataset contains Gallus gallus [taxid:9301] protein fasta sequences for the chicken isoform accessions from the UniProtKB database.\n\nDescription Domain\n   Keywords\n   - protein isoform sequences\n   - fasta\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB fasta sequence for all chicken isoform accessions data from the triplestore containing triples from nt file and extracts it into a dataset in a fasta format\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-gallus-gallus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2024_09_19/uniprot-proteome-gallus-gallus.nt\n   Output Subdomain\n      Name: chicken_protein_allsequences.fasta\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/chicken_protein_allsequences.fasta\n      Name: chicken_protein_allsequences.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/chicken_protein_allsequences.stat.csv\n\nFields\n      Name: \"sequence\"\n     Description: \"Amino acid sequence\"\n      Unique Values: \"43953\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/chicken_protein_allsequences.fasta"
}