{
    "bcoid": "GLY_000738",
    "title": "Glycan Biomarkers Citations (Biomarker Database)",
    "description": "The Glycan Biomarkers Citations dataset contains details of the publications present in the Glycan Biomarkers ...",
    "filename_list": "glycan_citations_biomarkers.csv",
    "filename": "glycan_citations_biomarkers.csv",
    "filetype": "csv",
    "categories": {
        "molecule": [
            "Glycan"
        ],
        "tag": [
            "Glycan Biomarkers Citations (Biomarker Database)"
        ],
        "file_type": [
            "csv"
        ],
        "status": [
            "Reviewed"
        ],
        "scope": [
            "internal"
        ],
        "species": [
            "Drosophila melanogaster",
            "Homo sapiens",
            "Mus musculus",
            "Sus scrofa",
            "Rattus",
            "Rattus norvegicus",
            "Severe acute respiratory syndrome coronavirus 2",
            "Saccharomyces cerevisiae",
            "Dictyostelium discoideum",
            "Hepacivirus C"
        ]
    },
    "minitable": {
        "content": [
            [
                "G78959US...",
                "Detection of..."
            ],
            [
                "G36521AS...",
                "A strategy t..."
            ]
        ],
        "headers": [
            "glytoucan_ac...",
            "title..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "glytoucan_ac"
                },
                {
                    "type": "string",
                    "label": "title"
                },
                {
                    "type": "string",
                    "label": "journal_name"
                },
                {
                    "type": "string",
                    "label": "publication_date"
                },
                {
                    "type": "string",
                    "label": "authors"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "biomarker_id"
                }
            ],
            [
                "G78959US",
                "Detection of Chemotherapy-resistant Pancreatic Cancer Using a Glycan Biomarker, sTRA.",
                "Clinical cancer research : an official journal of the American Association for Cancer Research",
                "2021 Jan 1",
                "Gao C, Wisniewski L, Liu Y, Staal B, Beddows I, Plenker D, Aldakkak M, Hall J, Barnett D, Gouda MK, Allen P, Drake R, Zureikat A, Huang Y, Evans D, Singhi A, Brand RE, Tuveson DA, Tsai S, Haab BB",
                "glycan_xref_pubmed",
                "33093149",
                "glycan_xref_glygen_ds",
                "GLY_000737",
                "AA5014-1"
            ],
            [
                "G36521AS",
                "A strategy to reveal potential glycan markers from serum glycoproteins associated with breast cancer progression.",
                "Glycobiology",
                "2008 Dec",
                "Abd Hamid UM, Royle L, Saldova R, Radcliffe CM, Harvey DJ, Storr SJ, Pardo M, Antrobus R, Chapman CJ, Zitzmann N, Robertson JF, Dwek RA, Rudd PM",
                "glycan_xref_pubmed",
                "18818422",
                "glycan_xref_glygen_ds",
                "GLY_000737",
                "AA5015-1"
            ]
        ]
    },
    "readme": "Name\n   - Glycan Biomarkers Citations (Biomarker Database)\n\nVersion\n   - v-2.7.1\n\nCreated on\n  - 2023-03-14T20:13:36.255Z\n\nModified on\n   - 2024-05-17T11:24:11.302Z\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Dan Lyman [danlyman@gwu.edu], Luke Johnson [luke.johnson@email.gwu.edu], Urnisha Bhuiyan [sbhuiyan28@email.gwu.edu], Cyrus Au-Yeung [cyruschauyeung@gwu.edu], Kate Warner [k.warner1@gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The Glycan Biomarkers Citations dataset contains details of the publications present in the Glycan Biomarkers dataset (https://data.glygen.org/GLY_000737).\n\nDescription Domain\n   Keywords\n   - Publications\n   - Citations\n   - PubMed\n   - Biomarker DB\n\n   Pipeline Steps\n   - Step-1: The script extracts the PMID from the dataset and uses the Entrez API to retrieve the publication details and extracts in a csv dataset.\n\nExecution Domain\n   Scripts   - https://github.com/glygener/glygen-backend-integration/blob/master/dataset-maker/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: glycan_biomarkers.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/glycan_biomarkers.csv\n      Name: glycan_masterlist.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/glycan_masterlist.csv\n   Output Subdomain\n      Name: glycan_citations_biomarkers.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/glycan_citations_biomarkers.csv\n      Name: glycan_citations_biomarkers.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-2.7.1/reviewed/glycan_citations_biomarkers.stat.csv\n\nFields\n      Name: \"glytoucan_ac\"\n     Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n      Unique Values: \"17\"\n      Name: \"title\"\n     Description: \"Title of the published article in the journal\"\n      Unique Values: \"7\"\n      Name: \"journal_name\"\n     Description: \"The name of the journal in which the article is published\"\n      Unique Values: \"6\"\n      Name: \"publication_date\"\n     Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n      Unique Values: \"7\"\n      Name: \"authors\"\n     Description: \"NA\"\n      Unique Values: \"7\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"7\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"1\"\n      Name: \"biomarker_id\"\n     Description: \"\"\n      Unique Values: \"17\"",
    "downloadurl": "/ln2data/releases/data/v-2.7.1/reviewed/glycan_citations_biomarkers.csv"
}